Gene omics information

Query gene ID	Zm.3284.2.A1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.3284.2.A1_a_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	S.X.	H.G.	Please select
0.83	95.6	Zm.556.2.A1_a_at	BM380003	glutathione transferase31	-	6e-4	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	S.X.	H.G.	Please select
0.80	94.0	Zm.7409.1.A1_at	CF042542	hypothetical protein LOC100191559	-	2e-1	At4g15790	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.4999.1.S1_at	AI600285	-	-	7e-1	At5g04047	-	S.X.	H.G.	Please select
0.67	85.8	Zm.6951.1.A1_at	AI065801	-	-	3e+0	At1g60710	ATB2	S.X.	H.G.	Please select
0.43	52.8	Zm.7411.1.A1_at	BM072807	hypothetical protein LOC100277462	-	2e+0	At2g14390	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.8	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.8	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.6	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1297	Zm.3284.2.A1_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.29	9e-151	531	Zm.3284.1.A1_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	C.G.	S.X.	Please select
0.29	9e-151	531	Zm.3284.1.A1_x_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	C.G.	S.X.	Please select
0.33	5e-106	383	Zm.8833.1.A1_at	BM075816	-	-	2e+0	At5g18310	unknown protein	C.G.	S.X.	Please select
0.17	1e-48	192	Zm.10006.1.A1_at	AY109066.1	-	-	4e-2	At2g21380	kinesin motor protein-related	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.2187.1.S1_at	CF010931	hypothetical protein LOC100276249	-	1e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.17209.1.A1_at	BM073068	hypothetical protein LOC100272669	-	6e+0	At5g51880	iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.16907.1.S1_at	AI691771	-	-	4e-50	At3g18000	XPL1 (XIPOTL 1)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.1572.1.A1_at	BQ538744	hypothetical protein LOC100217100	-	4e+0	At5g08330	TCP family transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g45750	834614	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus, vacuole;MOFPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-2	40	Glycine max	GmaAffx.10241.1.S1_at	BI322123	-	-	4e-1	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.17	6e-38	157	Hordeum vulgare	Contig17746_at	Contig17746	-	-	2e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	C.G.	S.X.	Please select
0.10	1e-48	194	Oryza sativa	Os10g0512800	BP184837	-	ab initio prediction with EST support	2e-49	At4g39050	kinesin-related protein (MKRP2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.22784.1.S1_at	DN497109	-	-	3e+0	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	5e-28	125	Triticum aestivum	Ta.29364.1.S1_at	CA726841	-	-	2e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1617608_at	CD007537	-	-	5e+0	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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