Gene omics information

Query gene ID	Zm.3284.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3284.1.A1_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	S.X.	H.G.	Please select
0.73	89.9	Zm.3410.1.A1_at	AB035645.1	ferredoxin	-	1e-42	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.3807.1.A1_at	BE639135	-	-	4e+0	At2g45360	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	S.X.	H.G.	Please select
0.61	79.5	Zm.370.1.S1_at	AF023159.1	starch synthase DULL1	-	1e-21	At1g11720	ATSS3 (starch synthase 3)	S.X.	H.G.	Please select
0.47	59.9	Zm.11740.1.S1_at	BM380369	-	-	1e-1	At5g28770	BZO2H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.9	100.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
47.7	100.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2541	Zm.3284.1.A1_x_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	C.G.	S.X.	Please select
0.29	1e-148	525	Zm.3284.2.A1_a_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.29	1e-148	525	Zm.3284.2.A1_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.32	6e-104	377	Zm.8833.1.A1_at	BM075816	-	-	2e+0	At5g18310	unknown protein	C.G.	S.X.	Please select
0.13	5e-49	194	Zm.10006.1.A1_at	AY109066.1	-	-	4e-2	At2g21380	kinesin motor protein-related	C.G.	S.X.	Please select
0.04	5e-9	61	Zm.13795.1.A1_at	AB007502.1	squalene synthase1	-	8e-23	At4g34640	SQS1 (SQUALENE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	5e-9	61	Zm.13795.2.S1_at	CF042915	squalene synthase1	-	7e-20	At4g34640	SQS1 (SQUALENE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	5e-9	61	Zm.13795.2.S1_a_at	CF042915	hypothetical protein LOC100191601 /// squalene synthase1	-	7e-20	At4g34640	SQS1 (SQUALENE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.2187.1.S1_at	CF010931	hypothetical protein LOC100276249	-	1e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At3g01850	821068	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	F:ribulose-phosphate 3-epimerase activity, catalytic activity;P:carbohydrate metabolic process, metabolic process;C:endomembrane system;OBMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-2	40	Glycine max	GmaAffx.10241.1.S1_at	BI322123	-	-	4e-1	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.13	1e-40	167	Hordeum vulgare	Contig17746_at	Contig17746	-	-	2e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	C.G.	S.X.	Please select
0.13	2e-46	188	Oryza sativa	Os10g0512800	BP184837	-	ab initio prediction with EST support	2e-49	At4g39050	kinesin-related protein (MKRP2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.225103.1.S1_at	pmrna44203	hypothetical protein	-	4e-11	At2g29140	APUM3 (Arabidopsis Pumilio 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-28	127	Triticum aestivum	Ta.29364.1.S1_at	CA726841	-	-	2e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1617608_at	CD007537	-	-	5e+0	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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