Gene omics information

Query gene ID	Zm.3277.1.A1_at
Gene name	hypothetical protein LOC100193700
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.2	Zm.3277.1.A1_at	CO520691	hypothetical protein LOC100193700	-	2e-8	At1g75220	integral membrane protein, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.6506.1.A1_a_at	AI714910	replication protein A 70 kDa DNA-binding subunit	-	1e-10	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	S.X.	H.G.	Please select
0.36	41.3	Zm.10656.1.A1_at	BQ538423	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	S.X.	H.G.	Please select
0.23	18.6	Zm.12805.1.A1_at	CA399164	-	-	1e+0	At2g03550	hydrolase	S.X.	H.G.	Please select
0.22	16.9	Zm.12804.1.A1_at	CA399162	-	-	2e-12	At1g24190	SNL3 (SIN3-LIKE 3)	S.X.	H.G.	Please select
0.13	6.8	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.12	5.9	Zm.8842.1.A1_at	BM075870	hypothetical protein LOC100193075	-	1e+0	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-11	69	Zm.18248.1.A1_at	CN844167	solute carrier family 2, facilitated glucose transporter member 8	-	1e-1	At3g05160	sugar transporter, putative	C.G.	S.X.	Please select
0.04	1e-8	59	Zm.9590.1.A1_at	CK986177	-	-	6e-1	At1g75220	integral membrane protein, putative	C.G.	S.X.	Please select
0.10	2e-7	56	Zm.1566.1.A1_at	CF031520	-	-	8e-1	At1g75220	integral membrane protein, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10449.1.S1_at	BQ528465	hypothetical protein LOC100274604	-	5e-4	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.3474.1.A1_at	AY112601.1	-	-	5e-5	At1g77420	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5405.1.A1_at	AY109111.1	hypothetical protein LOC100280064 /// glutamyl-tRNA	-	2e-16	At3g25660	glutamyl-tRNA(Gln) amidotransferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2817.2.A1_at	CB350638	hypothetical protein LOC100277525	-	7e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19048.1.A1_at	AI857148	carbohydrate transporter/ sugar porter	-	1e+0	At4g26080	ABI1 (ABA INSENSITIVE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12948.1.S1_at	CF056953	hypothetical protein LOC100194368	-	3e-2	At4g14960	TUA6	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-8	59	Arabidopsis thaliana	At1g75220	843859	integral membrane protein, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BMFPOAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-4	48	Glycine max	Gma.4511.1.A1_at	BI967611	-	-	8e-16	At1g75220	integral membrane protein, putative	C.G.	S.X.	Please select
0.39	5e-45	180	Hordeum vulgare	bags16h04_at	bags16h04	-	-	9e-5	At3g05400	sugar transporter, putative	C.G.	S.X.	Please select
0.22	2e-72	274	Oryza sativa	Os05g0579000	AK068594.1	-	Integral membrane protein	1e-3	At2g48020	sugar transporter, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	6e-10	65	Populus trichocarpa	PtpAffx.17771.1.A1_at	CV273533	hypothetical protein	-	4e-13	At1g75220	integral membrane protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	2e-18	93	Triticum aestivum	Ta.30759.2.A1_a_at	CA608414	-	-	4e+0	At4g32360	NADP adrenodoxin-like ferredoxin reductase	C.G.	S.X.	Please select
0.04	7e+0	30	Vitis vinifera	1621905_at	CF414354	-	-	4e-1	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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