Gene omics information

Query gene ID	Zm.326.1.S1_at
Gene name	response regulator 7
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.326.1.S1_at	AB042269.1	response regulator 7	-	3e+0	At5g41761	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.1806.1.A1_at	BG840748	-	-	3e-1	At5g44900	transmembrane receptor	S.X.	H.G.	Please select
0.59	76.1	Zm.16794.1.A1_at	AF330034.1	isopentenyl pyrophosphate isomerase	-	7e-35	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	S.X.	H.G.	Please select
0.57	75.1	Zm.17973.1.A1_s_at	AI812220	-	-	4e+0	At3g24540	protein kinase family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.16829.3.S1_at	AY111089.1	-	-	4e+0	At5g55240	caleosin-related family protein / embryo-specific protein, putative	S.X.	H.G.	Please select
0.42	51.3	Zm.14021.1.S1_at	AY107096.1	ORMDL family protein	-	5e+0	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please select
0.33	36.0	Zm.5207.1.S1_at	AY107278.1	hypothetical protein LOC100192596	-	5e-23	At4g03120	proline-rich family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM202400	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	6e-49	194	Zm.18496.1.S1_at	CO519895	hypothetical protein LOC100217235	-	2e-1	At5g05100	nucleic acid binding	C.G.	S.X.	Please select
0.03	9e-5	48	Zm.222.1.S1_at	AB024291.1	cytokinin response regulator2	-	4e-1	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.04	1e-3	44	Zm.287.1.S1_at	AB042260.1	response regulator	-	7e-5	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.03	8e-2	38	Zm.323.1.S1_at	AB042261.1	hypothetical protein LOC100280379	-	3e-2	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	C.G.	S.X.	Please select
0.03	8e-2	38	Zm.325.1.A1_at	AB042268.1	response regulator 6	-	2e-7	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.03	8e-2	38	Zm.13810.1.S1_at	AB042267.1	hypothetical protein LOC100191253	-	6e-8	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4367.1.S1_at	AY107325.1	mitochondrial import receptor subunit TOM22	-	1e-4	At5g43970	TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.271.1.S1_at	L44133.1	rough sheath1	-	4e-15	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18900.1.S1_at	AY359575.1	acc oxidase	-	7e-7	At1g12010	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g41761	6241304	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	HgAffx.23543.1.S1_at	BF014306	-	-	8e-1	At2g35680	dual specificity protein phosphatase family protein	C.G.	S.X.	Please select
0.08	6e-6	52	Hordeum vulgare	HVSMEg0001J09r2_at	HVSMEg0001J09r2	-	-	4e+0	At1g72600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.26	5e-53	210	Oryza sativa	Os02g0557800	AK070645.1	-	Response regulator receiver domain containingprotein	8e-1	At2g40380	PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.114042.1.A1_s_at	CV273761	hypothetical protein	-	3e+0	At4g21445	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	1e-21	105	Triticum aestivum	Ta.25890.1.S1_at	CD454104	-	-	3e+0	At5g41761	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1615448_at	CF568935	-	-	1e-61	At5g59910	HTB4	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage