Gene omics information

Query gene ID	Zm.3247.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.3247.1.A1_at	AY109731.1	-	-	1e-52	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	S.X.	H.G.	Please select
0.33	36.0	Zm.13610.1.A1_at	AY107563.1	LOL3	-	5e-1	At4g03540	integral membrane family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.3238.1.A1_at	AW331095	-	-	3e-6	At2g18300	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.18	11.6	Zm.17157.1.A1_at	BM074525	-	-	4e+0	At5g22970	unknown protein	S.X.	H.G.	Please select
0.16	9.4	Zm.3316.1.A1_at	CF002679	ribosome-like protein	-	2e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.09	4.0	ZmAffx.282.1.A1_at	AI670410	-	-	3e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.05	1.9	Zm.663.1.S1_at	AF318075.1	cis-zeatin O-glucosyltransferase1	-	7e-1	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.9	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-5	50	Zm.174.1.A1_at	AF073330.1	replication origin activator 2	-	1e-83	At5g46280	DNA replication licensing factor, putative	C.G.	S.X.	Please select
0.04	7e-3	42	Zm.3812.1.S1_at	CK347839	hypothetical protein LOC100277877	-	2e-36	At4g02060	PRL (PROLIFERA)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.9742.1.A1_at	BU099018	hypothetical protein LOC100274643	-	3e+0	At5g01380	transcription factor	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.3044.1.S1_at	AW360661	-	-	2e-10	At1g27900	RNA helicase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.14487.1.S1_at	AY104322.1	lipoxygenase	-	7e-3	At3g45140	LOX2 (LIPOXYGENASE 2)	C.G.	S.X.	Please select
0.02	2e+0	34	Zm.13908.1.S1_x_at	AF099369.1	R2R3MYB-domain protein /// transcription factor MYB8	-	1e-6	At4g38620	MYB4	C.G.	S.X.	Please select
0.02	2e+0	34	Zm.13908.1.A1_at	AF099369.1	R2R3MYB-domain protein	-	1e-6	At4g38620	MYB4	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.91.1.S1_at	AY111773.1	hypothetical protein LOC100192631	-	4e+0	At4g23895	pleckstrin homology (PH) domain-containing protein-related	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.9014.2.A1_at	AI714470	PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2	-	2e-68	At2g42500	PP2A-4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-52	208	Arabidopsis thaliana	At1g44900	841056	ATP binding / DNA binding / DNA-dependent ATPase	F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	2e-67	258	Glycine max	Gma.2371.1.S1_at	BU550313	-	-	5e-88	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	C.G.	S.X.	Please select
0.43	0	1112	Hordeum vulgare	Contig5180_at	Contig5180	-	-	4e-66	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	C.G.	S.X.	Please select
0.40	0	759	Oryza sativa	Os11g0484300	AK121422.1	-	MCM protein 2 family protein	5e-87	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	2e-45	184	Populus trichocarpa	PtpAffx.200274.1.S1_at	pmrna540	-	-	2e-100	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	4e-151	535	Triticum aestivum	Ta.2860.1.S1_at	AY532594.1	minichromosomal maintenance factor	-	6e-59	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1615178_at	CB343536	hypothetical protein LOC100267212	-	1e+0	At4g23760	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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