Gene omics information

Query gene ID	Zm.322.1.S1_at
Gene name	basal layer antifungal peptide
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.322.1.S1_at	AJ297903.1	basal layer antifungal peptide	-	5e+0	At5g06230	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.3219.3.S1_at	CF056029	thiamine biosynthesis protein thiC	-	2e-119	At2g29630	THIC (ThiaminC)	S.X.	H.G.	Please select
0.55	71.6	Zm.3216.1.S1_at	AJ006537	limonoid UDP-glucosyltransferase	-	1e-1	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	S.X.	H.G.	Please select
0.50	65.7	Zm.10301.1.A1_at	BU050993	-	-	1e+0	At4g03565	-	S.X.	H.G.	Please select
0.40	48.5	Zm.4667.1.A1_at	BG266366	hypothetical protein LOC100274574	-	4e-1	At1g32780	alcohol dehydrogenase, putative	S.X.	H.G.	Please select
0.31	31.6	Zm.16989.1.S1_at	CK849999	-	-	8e-2	At4g28480	DNAJ heat shock family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.2	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.7	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
14.7	98.9	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	5e-177	619	Zm.321.1.S1_at	CF006447	basal layer antifungal peptide	-	3e-1	At5g57370	unknown protein	C.G.	S.X.	Please select
0.05	1e-7	56	Zm.5732.1.A1_x_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	C.G.	S.X.	Please select
0.05	1e-7	56	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	C.G.	S.X.	Please select
0.04	6e-7	54	Zm.4715.1.A1_at	AI600987	-	-	6e+0	At5g65660	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	9e-6	50	Zm.5781.1.A1_at	CK369535	hypothetical protein LOC100278740	-	3e-14	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.02	9e-6	50	Zm.2862.1.A1_a_at	CF054010	calnexin	-	6e-73	At5g61790	calnexin 1 (CNX1)	C.G.	S.X.	Please select
0.02	9e-6	50	Zm.2862.1.A1_at	CF054010	Calnexin	-	6e-73	At5g61790	calnexin 1 (CNX1)	C.G.	S.X.	Please select
0.04	4e-5	48	Zm.2984.2.A1_at	CF059668	-	-	3e+0	At5g39520	unknown protein	C.G.	S.X.	Please select
0.04	4e-5	48	Zm.2984.2.S1_at	AW120242	-	-	3e+0	At5g39520	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g06230	830510	unknown protein	F:unknown;P:unknown;C:endomembrane system;PFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.89050.1.A1_at	CK605986	-	-	6e-1	At1g29480	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	HW04J21u_at	HW04J21u	-	-	6e-1	At4g14785	SCRL23 (SCR-Like 23)	C.G.	S.X.	Please select
0.04	3e+0	34	Oryza sativa	OsAffx.32221.1.A1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.205142.1.S1_at	pmrna10179	hypothetical protein	-	3e+0	At3g55850	LAF3 (LONG AFTER FAR-RED 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-5	50	Triticum aestivum	TaAffx.22805.1.S1_at	CA744766	-	-	1e+0	At3g05935	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1622683_at	CA818631	hypothetical protein LOC100244354	-	3e-1	At3g32920	ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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