Gene omics information

Query gene ID	Zm.3183.1.A1_at
Gene name	hypothetical protein LOC100274988
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.6	Zm.3183.1.A1_at	CF634309	hypothetical protein LOC100274988	-	7e+0	At5g55640	unknown protein	S.X.	H.G.	Please select
0.69	86.5	Zm.5476.2.S1_at	CF016143	IQ calmodulin-binding motif family protein	-	2e-1	At1g29060	-	S.X.	H.G.	Please select
0.65	82.1	Zm.14513.6.A1_a_at	CD438865	hypothetical protein LOC100192746	-	2e-36	At1g09200	histone H3	S.X.	H.G.	Please select
0.63	81.1	Zm.9182.1.A1_s_at	BM267124	hypothetical protein LOC100278830	-	1e+0	At2g05803	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.11738.1.A1_at	CK827425	hypothetical protein LOC100272909	-	3e+0	At1g43667	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.17219.2.A1_at	AY106749.1	Adenine phosphoribosyltransferase	-	1e-5	At1g80050	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	S.X.	H.G.	Please select
0.57	75.1	Zm.5042.1.A1_a_at	AY105386.1	hypothetical protein LOC100191321	-	5e+0	At5g18970	AWPM-19-like membrane family protein	S.X.	H.G.	Please select
0.54	69.8	Zm.16537.3.S1_at	CA404068	hypothetical protein LOC100273170	-	2e-22	At3g04770	RPSAb (40S ribosomal protein SA B)	S.X.	H.G.	Please select
0.50	65.7	Zm.17980.1.A1_at	CK828030	-	-	7e-1	At1g19010	unknown protein	S.X.	H.G.	Please select
0.49	61.9	Zm.2059.1.S1_at	AI746127	-	-	1e-86	At3g58610	ketol-acid reductoisomerase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	97.8	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.4	97.5	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.1	97.4	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.8	97.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.9	96.7	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.8	96.6	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.6	96.4	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-4	44	Zm.17759.1.A1_at	CK371338	-	-	4e+0	At5g27670	HTA7 (HISTONE H2A 7)	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.6703.1.A1_at	CA398710	hypothetical protein LOC100273224	-	1e+0	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.17681.1.S1_at	CK369980	hypothetical protein LOC100193448	-	7e-1	At1g43900	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.16988.4.A1_at	AW498129	-	-	3e-54	At5g62690	TUB2	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.9319.1.A1_at	CF627080	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.7117.2.A1_at	CF627265	hypothetical protein LOC100273279	-	3e+0	At5g40155	-	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.5270.1.S1_at	CF623217	bax inhibitor 1	-	2e-3	At5g47120	ATBI1 (BAX INHIBITOR 1)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.4449.1.A1_at	BM074466	-	-	3e-2	At1g09560	GLP5 (GERMIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.3670.3.S1_at	CK827983	glycine-rich protein A3	-	4e-5	At5g45350	proline-rich family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e+0	32	Arabidopsis thaliana	At5g55640	835658	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.78997.1.S1_at	BU760916	-	-	2e-1	At1g11940	unknown protein	C.G.	S.X.	Please select
0.24	4e-24	111	Hordeum vulgare	Contig13915_at	Contig13915	-	-	7e-2	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.28	3e-16	87	Oryza sativa	Os03g0595200	NM_184956.1	-	Conserved hypothetical protein	3e-1	At3g51750	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	Ptp.4238.1.S1_s_at	DN489985	hypothetical protein	-	5e+0	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	3e-147	521	Triticum aestivum	TaAffx.8564.1.S1_at	CA623409	-	-	4e+0	At5g02220	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Vitis vinifera	1621111_at	BQ798687	hypothetical protein LOC100254821	-	2e+0	At4g33145	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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