Gene omics information

Query gene ID	Zm.3169.5.S1_x_at
Gene name	minichromosome maintenance protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3169.5.S1_x_at	AI739763	minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.7016.1.A1_a_at	AY103859.1	hypothetical protein LOC100275203 /// hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	S.X.	H.G.	Please select
0.55	71.6	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1103.1.A1_at	AW191100	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.108.1.S1_at	AI665554	Hypothetical protein LOC100191707	-	8e-1	At5g39640	unknown protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1176	Zm.3169.5.S1_a_at	AI739763	hypothetical protein LOC100279753 /// minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.38	0	773	Zm.3169.2.S1_at	CA404972	hypothetical protein LOC100279753	-	4e-53	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.37	0	668	Zm.3169.4.S1_a_at	AI619115	-	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.08	4e-49	194	Zm.8233.1.S1_a_at	AY103797.1	-	-	6e-14	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.08	4e-49	194	Zm.8233.1.A1_at	AI947630	-	-	1e-2	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.07	3e-37	155	Zm.3169.1.S1_at	AY104405.1	60S ribosomal protein L33-B	-	3e-6	At1g74270	60S ribosomal protein L35a (RPL35aC)	C.G.	S.X.	Please select
0.04	3e-22	105	Zm.4286.1.A1_at	AY103792.1	hypothetical protein LOC100274092	-	2e-17	At5g66680	DGL1	C.G.	S.X.	Please select
0.04	6e-14	77	Zm.13027.1.A1_a_at	CA403644	hypothetical protein LOC100191802	-	2e-11	At5g66680	DGL1	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.737.1.A1_at	D45403.1	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-1	38	Arabidopsis thaliana	At5g44635	834492	minichromosome maintenance family protein / MCM family protein	F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus;MOBFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	GmaAffx.48074.1.S1_at	AI966268	WRKY9 protein	-	3e-7	At2g03340	WRKY3	C.G.	S.X.	Please select
0.34	1e-76	286	Hordeum vulgare	Contig7102_at	Contig7102	-	-	2e-73	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.30	7e-125	448	Oryza sativa	Os05g0235800	AK102937.1	-	MCM family protein	3e-57	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-14	81	Populus trichocarpa	PtpAffx.200289.1.S1_at	pmrna573	hypothetical protein	-	1e-139	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	2e-77	289	Triticum aestivum	Ta.6297.1.S1_a_at	CA727622	-	-	1e-71	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1607617_at	BQ792942	-	-	2e-1	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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