Gene omics information

Query gene ID	Zm.3169.2.S1_at
Gene name	hypothetical protein LOC100279753
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3169.2.S1_at	CA404972	hypothetical protein LOC100279753	-	4e-53	At5g44635	minichromosome maintenance family protein / MCM family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.6594.1.A1_at	CF972362	hypothetical protein LOC100193029	-	1e-3	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.768.1.A1_at	BG355197	-	-	3e+0	At2g27750	nucleolar matrix protein-related	S.X.	H.G.	Please select
0.36	41.3	Zm.6715.1.S1_a_at	AY104238.1	RING finger and CHY zinc finger domain-containing protein 1	-	2e-5	At5g25560	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.6919.1.A1_at	CD448549	-	-	1e-14	At2g36490	DML1 (DEMETER-LIKE 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.401.1.A1_at	AF038586.1	pyruvate dehydrogenase kinase isoform 2	-	1e-11	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.6	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	0	845	Zm.3169.4.S1_a_at	AI619115	-	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.38	0	773	Zm.3169.5.S1_a_at	AI739763	hypothetical protein LOC100279753 /// minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.38	0	773	Zm.3169.5.S1_x_at	AI739763	minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.18	3e-61	236	Zm.3169.1.S1_at	AY104405.1	60S ribosomal protein L33-B	-	3e-6	At1g74270	60S ribosomal protein L35a (RPL35aC)	C.G.	S.X.	Please select
0.07	1e-45	184	Zm.17190.1.A1_a_at	BM332426	-	-	6e-3	At1g25330	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.1006.1.A1_at	BE639439	-	-	1e-16	At2g14050	MCM9	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.737.1.A1_at	D45403.1	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.737.1.A1_a_at	D45403.1	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.6732.2.A1_at	BM378973	-	-	4e-88	At2g27530	PGY1 (PIGGYBACK1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	4e-53	210	Arabidopsis thaliana	At5g44635	834492	minichromosome maintenance family protein / MCM family protein	F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus;MOBFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	5e-1	38	Glycine max	Gma.13554.1.A1_at	CD400455	-	-	3e+0	At1g27160	valyl-tRNA synthetase / valine--tRNA ligase-related	C.G.	S.X.	Please select
0.62	0	1406	Hordeum vulgare	Contig7102_at	Contig7102	-	-	2e-73	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.74	0	1475	Oryza sativa	Os05g0235800	AK102937.1	-	MCM family protein	3e-57	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	3e-82	307	Populus trichocarpa	PtpAffx.200289.1.S1_at	pmrna573	hypothetical protein	-	1e-139	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	0	1281	Triticum aestivum	Ta.6297.1.S1_a_at	CA727622	-	-	1e-71	At5g44635	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1618146_at	CF518965	hypothetical protein LOC100252301	-	4e+0	At2g17972	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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