CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3161.1.S1_at

Gene name hypothetical protein LOC100273395

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 81.1 Zm.3161.1.S1_at AY108575.1 hypothetical protein LOC100273395 - 3e-6 At2g35190 NPSN11 (NOVEL PLANT SNARE 11) S.X. H.G.
0.83 95.6 Zm.898.1.A1_a_at BM337541 - - 1e+0 At3g02730 TRXF1 (THIOREDOXIN F-TYPE 1) S.X. H.G.
0.67 85.8 Zm.12510.1.S1_at AW056992 - - 5e+0 At1g76955 Expressed protein S.X. H.G.
0.57 75.1 Zm.3875.1.S1_at BQ539306 - - 2e-31 At1g50200 ALATS (ALANYL-TRNA SYNTHETASE) S.X. H.G.
0.56 74.4 Zm.10141.1.A1_at AY108995.1 esterase - 2e+0 At4g38690 1-phosphatidylinositol phosphodiesterase-related S.X. H.G.
0.50 65.7 Zm.2770.1.A1_at BM380104 hypothetical protein LOC100192561 - 1e+0 At2g17860 pathogenesis-related thaumatin family protein S.X. H.G.
0.44 55.7 Zm.19215.2.S1_at BG321066 - - 2e-12 At1g30480 DRT111 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.0 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.2 98.0 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
7.9 97.9 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.2 94.5 GSM206311 Left pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 4e-71 268 Zm.2469.1.A1_at AI714755 novel plant SNARE 11 - 7e-7 At3g17440 NPSN13 (NOVEL PLANT SNARE 13) C.G. S.X.
0.38 2e-61 236 Zm.13641.1.S1_at BM336662 - - 6e-7 At3g17440 NPSN13 (NOVEL PLANT SNARE 13) C.G. S.X.
0.01 3e-1 36 Zm.14841.1.A1_at AI491693 hypothetical protein LOC100191514 - 2e+0 At2g07681 cytochrome c biogenesis protein, putative C.G. S.X.
0.02 1e+0 34 Zm.18060.1.A1_at CK985812 - - 2e+0 At4g07515 unknown protein C.G. S.X.
0.02 5e+0 32 ZmAffx.589.1.A1_at AI715017 - - 8e-1 At5g53880 unknown protein C.G. S.X.
0.02 5e+0 32 ZmAffx.589.1.S1_at AI715017 - - 8e-1 At5g53880 unknown protein C.G. S.X.
0.01 5e+0 32 Zm.8489.1.A1_at BQ538173 hypothetical protein LOC100273569 - 2e-23 At3g59660 C2 domain-containing protein / GRAM domain-containing protein C.G. S.X.
0.02 5e+0 32 Zm.717.1.A1_s_at BG842865 beta-expansin 1a - 1e+0 At5g61510 NADP-dependent oxidoreductase, putative C.G. S.X.
0.02 5e+0 32 Zm.717.1.A1_at BG842865 - - 1e+0 At5g61510 NADP-dependent oxidoreductase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-6 54 Arabidopsis thaliana At2g35190 818086 NPSN11 (NOVEL PLANT SNARE 11) plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate. - - - C.G. S.X.
0.06 6e-2 40 Glycine max GmaAffx.2201.2.S1_at BE555761 - - 1e-29 At1g48240 ATNPSN12 C.G. S.X.
0.45 6e-83 307 Hordeum vulgare Contig7769_at Contig7769 - - 6e-1 At3g17440 NPSN13 (NOVEL PLANT SNARE 13) C.G. S.X.
0.50 0 696 Oryza sativa Os03g0369800 AK064875.1 - Novel plant SNARE 13 (AtNPSN13) 2e-7 At1g48240 ATNPSN12 C.G. S.X.
0.14 4e-3 44 Populus trichocarpa PtpAffx.208428.1.S1_s_at pmrna16744 hypothetical protein - 2e-86 At3g17440 NPSN13 (NOVEL PLANT SNARE 13) C.G. S.X.
0.57 0 724 Triticum aestivum Ta.6531.1.S1_a_at BJ214727 - - 5e-1 At3g17440 NPSN13 (NOVEL PLANT SNARE 13) C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1622018_at CB978885 - - 9e-7 At4g31320 auxin-responsive protein, putative / small auxin up RNA (SAUR_C) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage