Gene omics information

Query gene ID	Zm.3153.3.S1_a_at
Gene name	B12D protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.3153.3.S1_a_at	CF624577	B12D protein	-	1e-3	At1g20440	COR47 (COLD-REGULATED 47)	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.216.1.A1_at	AI670224	-	-	1e+1	At5g44970	-	S.X.	H.G.	Please select
0.57	75.1	Zm.19.1.S1_at	M57249.1	phospholipid transfer protein homolog1	-	5e+0	At4g32105	galactosyltransferase	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.207.1.S1_at	AI670215	-	-	5e-2	At1g01390	UDP-glucoronosyl/UDP-glucosyl transferase family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.4814.3.A1_at	CD440511	elongation factor 1-beta	-	2e-10	At1g30230	elongation factor 1-beta / EF-1-beta	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.1057.1.S1_at	AI881913	hypothetical protein LOC100279987	-	5e-8	At1g61010	CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)	S.X.	H.G.	Please select
0.38	44.2	Zm.1619.1.A1_at	BE012216	-	-	1e+1	Atcg00760	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	98.5	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
9.6	98.3	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
9.5	98.3	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.5	98.1	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM206314	Upper pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.0	97.7	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.8	97.6	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.6	97.6	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.3	96.9	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	6e-41	167	Zm.3153.2.S1_x_at	AY103722.1	ferredoxin1 /// ferredoxin5	-	2e+0	At3g22820	allergen-related	C.G.	S.X.	Please select
0.15	6e-41	167	Zm.3153.2.S1_s_at	AY103722.1	ferredoxin1 /// ferredoxin5	-	2e+0	At3g22820	allergen-related	C.G.	S.X.	Please select
0.02	6e-7	54	Zm.1079.1.A1_a_at	U08401.1	hypothetical protein LOC100275493 /// carbonic anhydrase /// carbonic anhydrase	-	1e+0	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.02	6e-7	54	Zm.1079.1.A1_x_at	U08401.1	hypothetical protein LOC100275493	-	1e+0	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.04	4e-5	48	Zm.3714.2.A1_at	BQ619116	B12D protein	-	5e-1	At3g48140	senescence-associated protein, putative	C.G.	S.X.	Please select
0.03	6e-4	44	Zm.877.1.A1_at	BM078654	hypothetical protein LOC100276059	-	8e+0	At1g01750	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	C.G.	S.X.	Please select
0.05	2e-3	42	ZmAffx.1083.1.A1_at	AI974922	-	-	1e+0	At1g59830	PP2A-1	C.G.	S.X.	Please select
0.05	2e-3	42	ZmAffx.1083.1.S1_at	AI974922	-	-	1e+0	At1g59830	PP2A-1	C.G.	S.X.	Please select
0.05	2e-3	42	Zm.914.1.S1_at	CK368496	B12D protein	-	4e-4	At3g48140	senescence-associated protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-3	44	Arabidopsis thaliana	At1g20440	838632	COR47 (COLD-REGULATED 47)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-3	44	Glycine max	GmaAffx.52566.1.S1_at	AI959822	-	-	2e-4	At3g08950	electron transport SCO1/SenC family protein	C.G.	S.X.	Please select
0.14	4e-5	48	Hordeum vulgare	Contig11118_at	Contig11118	-	-	1e+0	At3g48140	senescence-associated protein, putative	C.G.	S.X.	Please select
0.27	8e-16	85	Oryza sativa	Os07g0274700	CR292552	-	HvB12D protein (B12Dg1 protein)	3e-1	At3g48140	senescence-associated protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.205274.1.S1_at	pmrna10459	-	-	3e+0	At5g47455	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	3e-23	109	Triticum aestivum	Ta.9481.1.S1_at	BQ744545	-	-	5e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	C.G.	S.X.	Please select
0.04	4e-4	44	Vitis vinifera	1609529_at	CF372558	-	-	4e-1	At4g35900	FD	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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