Gene omics information

Query gene ID	Zm.3134.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.3134.2.A1_at	AI770607	-	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	S.X.	H.G.	Please select
0.29	28.1	Zm.9605.1.A1_at	BM341116	-	-	1e+0	At1g15840	unknown protein	S.X.	H.G.	Please select
0.26	22.7	Zm.7870.1.S1_at	BU582061	activator of 90 kDa heat shock protein ATPase	-	1e-5	At3g12050	Aha1 domain-containing protein	S.X.	H.G.	Please select
0.22	16.9	Zm.13584.1.A1_at	AY107853.1	-	-	1e-72	At1g21640	NADK2	S.X.	H.G.	Please select
0.17	10.6	ZmAffx.205.1.A1_at	AI670190	hypothetical protein LOC100276892	-	8e-1	At4g17520	nuclear RNA-binding protein, putative	S.X.	H.G.	Please select
0.14	7.7	Zm.7370.1.A1_at	BM382341	beta-expansin 1a	-	5e-1	At1g20220	nucleic acid binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.9	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.3	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.8	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.0	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	841	Zm.3134.2.S1_at	AI770607	aldehyde dehydrogenase 3B1	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.95.1.A1_at	X79935.1	DNA binding with one finger3	-	8e-22	At2g37590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.04	9e-2	36	Zm.11991.1.A1_at	BM382459	-	-	1e+1	At5g50175	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.17826.1.A1_at	CK367946	hypothetical protein LOC100280315	-	1e-1	At2g31870	TEJ (Sanskrit for 'bright')	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9415.2.A1_at	BM348481	-	-	7e-2	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9415.1.A1_at	BM341676	-	-	7e-2	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6761.1.A1_at	CD439493	hypothetical protein LOC100217189	-	1e-5	At3g10260	reticulon family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6066.1.A1_at	CF635836	-	-	2e-1	At1g30690	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Arabidopsis thaliana	At3g23000	821874	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	PsAffx.psMA003xL20f_s_at	PsAffx.psMA003xL20f	-	-	5e-3	At4g38410	dehydrin, putative	C.G.	S.X.	Please select
0.06	2e-15	81	Hordeum vulgare	Contig5376_at	Contig5376	-	-	3e+0	At3g44950	glycine-rich protein	C.G.	S.X.	Please select
0.11	2e-24	113	Oryza sativa	Os04g0540600	AF464932.1	-	Aldehyde dehydrogenase domain containing protein	1e+0	At3g55790	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.22431.2.S1_a_at	DN502178	hypothetical protein	-	1e-2	At3g29780	RALFL27 (ralf-like 27)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-13	75	Triticum aestivum	Ta.6985.3.S1_at	BJ244545	-	-	5e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619833_at	CF515145	-	-	1e+0	At5g50345	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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