Gene omics information

Query gene ID	Zm.3132.1.A1_at
Gene name	hypothetical protein LOC100273996
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	S.X.	H.G.	Please select
0.50	65.7	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	S.X.	H.G.	Please select
0.25	21.3	ZmAffx.195.1.A1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	98.3	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.7	97.9	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.6	97.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1667	Zm.3132.1.S1_at	AY112211.1	-	-	1e-10	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.98	0	1667	Zm.3132.1.S1_a_at	AY112211.1	-	-	1e-10	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.22	1e-73	276	Zm.3132.2.A1_at	AY109250.1	-	-	4e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.32	1e-73	276	Zm.3132.2.S1_at	AY109250.1	hypothetical protein LOC100273073	-	4e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.6715.2.A1_at	BM337592	RING finger and CHY zinc finger domain-containing protein 1	-	3e-10	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6288.1.A1_at	CD990969	Nucleotide sugar translocator BT2B	-	5e-7	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.2019.1.A1_at	BG842500	hypothetical protein LOC100273860	-	2e-6	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.1125.1.A1_at	BI993208	hypothetical protein LOC100193433	-	2e-13	At5g14260	SET domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.10586.1.A1_at	BQ538465	hypothetical protein LOC100191582	-	5e-2	At3g51100	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-7	57	Arabidopsis thaliana	At3g02510	821100	regulator of chromosome condensation (RCC1) family protein	F:chromatin binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	8e-22	105	Glycine max	Gma.7945.1.S1_at	BU551250	-	-	2e-36	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.32	6e-116	416	Hordeum vulgare	Contig6068_at	Contig6068	-	-	2e-14	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.37	5e-172	605	Oryza sativa	Os08g0430700	AK101681.1	-	Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein	1e-5	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-22	107	Populus trichocarpa	PtpAffx.215447.1.S1_at	pmrna29646	hypothetical protein	-	4e-73	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	7e-28	125	Triticum aestivum	Ta.15767.1.A1_at	CA486788	-	-	9e-1	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please select
0.44	3e-36	151	Vitis vinifera	1613080_at	CD798687	hypothetical protein LOC100265192	-	6e-53	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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