Gene omics information

Query gene ID	Zm.301.2.A1_at
Gene name	hypothetical protein LOC100276367
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	S.X.	H.G.	Please select
0.71	88.2	Zm.2234.1.S1_a_at	CO526542	hypothetical protein LOC100276749 /// hypothetical protein LOC100276758	-	2e+1	At5g53486	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.10063.1.A1_at	BM378869	homeobox protein HD1	-	1e-12	At4g32040	KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)	S.X.	H.G.	Please select
0.55	71.6	Zm.4239.1.A1_at	BM080569	hypothetical protein LOC100193561	-	2e+0	At5g04820	OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)	S.X.	H.G.	Please select
0.38	44.2	Zm.4308.1.A1_at	AY112093.1	-	-	1e-1	At1g08390	nucleic acid binding	S.X.	H.G.	Please select
0.31	31.6	Zm.18237.1.S1_at	CN845290	mitochondrial carrier protein CGI-69	-	3e-6	At4g27940	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	98.3	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.5	98.3	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.8	98.1	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.6	98.1	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.6	98.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.3	98.0	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.0	98.0	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.8	97.9	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.7	97.9	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.0	97.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	2837	Zm.301.2.A1_x_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	C.G.	S.X.	Please select
0.70	0	1552	Zm.2385.2.A1_a_at	AY111554.1	DNA-binding protein	-	1e-15	At2g34510	-	C.G.	S.X.	Please select
0.70	0	1552	Zm.2385.2.A1_at	AY111554.1	hypothetical protein LOC100276100	-	1e-15	At2g34510	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8760.1.S1_at	CK827613	phenazine biosynthesis protein	-	7e-4	At4g02860	catalytic	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7579.1.A1_at	CO520294	hypothetical protein LOC100276241	-	3e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6644.1.S1_at	AY104341.1	hypothetical protein LOC100191256	-	2e-4	At5g42050	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.14396.1.S1_at	AF147726.1	photosystem I subunit d1	-	1e-3	At1g03130	PSAD-2 (photosystem I subunit D-2)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13604.1.A1_at	AY107633.1	Hypothetical protein LOC100192852	-	2e-1	At2g44770	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13604.1.S1_at	CD963810	hypothetical protein LOC100192852	-	2e-1	At2g44770	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-9	63	Arabidopsis thaliana	At2g34510	818014	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	5e-12	73	Glycine max	GmaAffx.63408.1.S1_at	AW099756	-	-	5e-31	At1g29980	-	C.G.	S.X.	Please select
0.50	1e-152	539	Hordeum vulgare	Contig5845_at	Contig5845	-	-	3e-3	At2g34510	-	C.G.	S.X.	Please select
0.60	0	650	Oryza sativa	Os01g0756600	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-5	52	Populus trichocarpa	PtpAffx.6581.5.S1_at	CV237183	-	-	2e-3	At1g29980	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	1e-132	474	Triticum aestivum	Ta.2840.1.S1_at	BJ311413	-	-	4e+0	At1g58007	unknown protein	C.G.	S.X.	Please select
0.04	6e-5	48	Vitis vinifera	1609590_s_at	CB981725	hypothetical protein LOC100253669	-	3e-25	At2g34510	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage