Gene omics information

Query gene ID	Zm.2984.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2984.2.A1_at	CF059668	-	-	3e+0	At5g39520	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.9398.1.S1_at	BM268586	hypothetical protein LOC100275668	-	8e-6	At5g24610	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.989.1.A1_at	AI396095	hypothetical protein LOC100193648	-	1e-1	At1g80950	phospholipid/glycerol acyltransferase family protein	S.X.	H.G.	Please select
0.23	18.6	Zm.1010.1.A1_at	U85495.1	LON2 protein	-	4e-20	At5g26860	LON1 (LON PROTEASE 1)	S.X.	H.G.	Please select
0.10	4.6	Zm.2982.1.A1_at	BG842459	-	-	6e-6	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please select
0.07	2.9	Zm.3992.1.S1_at	BG841673	hypothetical protein LOC100280384	-	6e-2	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	2e-114	410	Zm.2984.2.S1_at	AW120242	-	-	3e+0	At5g39520	unknown protein	C.G.	S.X.	Please select
0.05	3e-5	48	Zm.5732.1.A1_x_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	C.G.	S.X.	Please select
0.05	3e-5	48	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	C.G.	S.X.	Please select
0.04	3e-5	48	Zm.322.1.S1_at	AJ297903.1	basal layer antifungal peptide	-	5e+0	At5g06230	unknown protein	C.G.	S.X.	Please select
0.02	1e-4	46	Zm.5942.2.A1_at	AW573352	-	-	9e-7	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	C.G.	S.X.	Please select
0.04	1e-4	46	Zm.4715.1.A1_at	AI600987	-	-	6e+0	At5g65660	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	1e-4	46	Zm.4337.1.A1_at	AI649762	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	-	3e-11	At2g26930	ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)	C.G.	S.X.	Please select
0.02	1e-4	46	Zm.17998.1.A1_at	BG873837	-	-	2e-35	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	C.G.	S.X.	Please select
0.02	1e-4	46	Zm.16807.1.A1_at	AY104666.1	hypothetical protein LOC100272422	-	5e-21	At3g55200	splicing factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g39520	833948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	Gma.8643.3.S1_at	CA784901	-	-	7e-5	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	C.G.	S.X.	Please select
0.03	7e+0	30	Hordeum vulgare	HA22A10r_at	HA22A10r	-	-	9e-1	At1g19060	unknown protein	C.G.	S.X.	Please select
0.04	1e-4	48	Oryza sativa	Os03g0245700	AK119222.1	-	Senescence-associated protein 15	8e-14	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+1	30	Populus trichocarpa	PtpAffx.90518.1.S1_at	CK104433	-	-	4e+0	At3g23850	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	4e-9	61	Triticum aestivum	Ta.13079.1.A1_at	CD490968	-	-	4e+0	At5g06040	self-incompatibility protein-related	C.G.	S.X.	Please select
0.04	2e+1	28	Vitis vinifera	1616076_s_at	CF972320.1	hypothetical protein LOC100263773	-	7e-1	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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