Gene omics information

Query gene ID	Zm.2979.1.S1_at
Gene name	trafficking protein particle complex protein 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	S.X.	H.G.	Please select
0.80	94.0	Zm.17310.1.A1_at	CK368488	-	-	7e+0	At5g42000	ORMDL family protein	S.X.	H.G.	Please select
0.58	75.1	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	S.X.	H.G.	Please select
0.54	69.8	Zm.7176.1.A1_at	CF629363	-	-	5e+0	At5g05210	nucleolar matrix protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.393.1.S1_at	U41466.1	glossy15	-	3e-7	At5g67180	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.16593.4.S1_at	CA401361	hypothetical protein LOC100194160	-	2e-4	At5g51840	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.3938.1.A1_at	CB350990	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	S.X.	H.G.	Please select
0.31	31.6	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.2	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.7	95.4	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.6	95.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.5	95.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.4	94.9	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.2	94.5	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
3.2	94.5	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
3.1	94.3	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
3.0	94.0	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	3e-99	361	Zm.12414.1.A1_at	CK826656	trafficking protein particle complex protein 2	-	1e-1	At1g80500	-	C.G.	S.X.	Please select
0.12	8e-38	157	Zm.7959.1.A1_at	BM080622	-	-	7e+0	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	C.G.	S.X.	Please select
0.04	8e-4	44	Zm.17947.1.A1_at	CF626929	-	-	4e+0	At4g17690	peroxidase, putative	C.G.	S.X.	Please select
0.02	8e-4	44	Zm.17370.1.S1_at	CF637574	epoxide hydrolase 2	-	7e-4	At2g26750	epoxide hydrolase, putative	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.4037.2.A1_at	CF631049	hypothetical protein LOC100272959 /// receptor-like protein kinase RK20-1	-	3e-2	At4g05200	protein kinase family protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.18000.1.A1_at	CK827977	-	-	6e+0	At4g31730	GDU1 (GLUTAMINE DUMPER 1)	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.17931.1.A1_at	CK827676	hydrogen-transporting ATP synthase, rotational mechanism	-	5e+0	At4g34265	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.17661.1.A1_at	CK369350	-	-	1e+0	At5g61410	RPE	C.G.	S.X.	Please select
0.06	3e-3	42	Zm.17689.1.S1_at	CK370194	-	-	3e+0	At1g63055	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	2e-12	73	Arabidopsis thaliana	At1g80500	844389	-	F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	8e-16	85	Glycine max	Gma.5103.1.S1_a_at	BI968925	-	-	2e-59	At1g80500	-	C.G.	S.X.	Please select
0.42	5e-138	490	Hordeum vulgare	Contig8856_s_at	Contig8856	-	-	8e-18	At1g80500	-	C.G.	S.X.	Please select
0.41	2e-60	234	Oryza sativa	OsAffx.26429.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	1e-14	81	Populus trichocarpa	PtpAffx.32818.3.A1_a_at	CV225954	hypothetical protein	-	7e-27	At1g80500	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	2e-142	506	Triticum aestivum	Ta.5609.1.S1_at	BJ249419	-	-	3e-8	At1g80500	-	C.G.	S.X.	Please select
0.12	4e-20	97	Vitis vinifera	1608842_at	CD800895	-	-	4e-41	At1g80500	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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