Gene omics information

Query gene ID	Zm.2972.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	94.3	Zm.2972.1.A1_at	BM073882	-	-	4e-3	At3g01810	-	S.X.	H.G.	Please select
0.60	77.8	Zm.7276.1.S1_at	BI674107	FLU	-	1e-2	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	S.X.	H.G.	Please select
0.56	74.4	Zm.17687.1.S1_at	CK370166	-	-	2e-1	At1g30972	-	S.X.	H.G.	Please select
0.47	59.9	Zm.3233.1.S1_at	BM379256	hypothetical protein LOC100273932	-	7e-1	At5g45630	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.6604.1.A1_at	AI467695	hypothetical protein LOC100280387	-	5e+0	At3g18160	peroxin-3 family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.2926.1.A1_at	CF630141	calmodulin-like protein 1	-	2e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.39	45.6	Zm.6569.9.A1_at	AW091447	40S ribosomal protein S15	-	6e-37	At5g09510	40S ribosomal protein S15 (RPS15D)	S.X.	H.G.	Please select
0.39	45.6	Zm.10826.1.S1_at	BQ619411	hypothetical protein LOC100274249	-	8e-9	At2g41190	amino acid transporter family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.236.1.S1_at	AJ011615.1	SBP-domain protein2	-	1e-2	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	S.X.	H.G.	Please select
0.35	38.9	Zm.13671.1.S1_at	CD001892	Hypothetical protein LOC100193899	-	5e+0	At5g42850	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	98.3	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.7	98.1	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.9	97.9	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.5	97.1	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.5	97.1	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	Zm.8900.1.A1_at	CK827399	hypothetical protein LOC100272787	-	2e-13	At1g11750	CLPP6	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.4433.1.A1_at	AY108076.1	-	-	4e-2	At3g09850	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.4433.1.S1_at	AY108076.1	G-patch domain containing protein	-	4e-2	At3g09850	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17509.1.S1_s_at	CK394687	low temperature viability protein	-	2e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17509.1.S1_at	CK394687	low temperature viability protein	-	2e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.6736.2.A1_at	AY106527.1	ATP binding protein	-	2e-35	At3g03940	protein kinase family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.6736.1.S1_at	AY108079.1	ATP binding protein	-	1e-37	At3g03940	protein kinase family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.4605.1.A1_at	AI795719	-	-	1e-4	At1g64350	SEH1H	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.4153.1.A1_at	AY105302.1	hydrophobic protein LTI6B	-	7e-2	At3g05890	RCI2B (RARE-COLD-INDUCIBLE 2B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-3	44	Arabidopsis thaliana	At3g01810	821073	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFBPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-2	40	Glycine max	GmaAffx.68027.1.S1_at	BG359427	-	-	9e-1	At5g20120	unknown protein	C.G.	S.X.	Please select
0.28	7e-34	145	Hordeum vulgare	Contig16468_at	Contig16468	-	-	8e-6	At2g42320	nucleolar protein gar2-related	C.G.	S.X.	Please select
0.48	9e-166	585	Oryza sativa	Os08g0505200	AK067190.1	-	Conserved hypothetical protein	4e-10	At2g42320	nucleolar protein gar2-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	9e-5	50	Populus trichocarpa	PtpAffx.208241.1.S1_s_at	pmrna16404	hypothetical protein	-	1e-20	At5g43230	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e-2	40	Triticum aestivum	Ta.22166.1.A1_x_at	CA727726	-	-	3e-1	At1g09230	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.06	1e-3	44	Vitis vinifera	1606524_at	CB979170	hypothetical protein LOC100266440	-	2e-19	At3g01810	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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