Gene omics information

Query gene ID	Zm.2966.1.S1_at
Gene name	hypothetical protein LOC100273775
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	92.5	Zm.2966.1.S1_at	AI001347	hypothetical protein LOC100273775	-	8e-1	At1g01810	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.14115.1.A1_at	AY104533.1	hypothetical protein LOC100278990	-	2e+0	At5g19750	peroxisomal membrane 22 kDa family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.4182.1.S1_at	CF631780	hypothetical protein LOC100276027	-	1e-4	At5g54855	pollen Ole e 1 allergen and extensin family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5207.1.S1_at	AY107278.1	hypothetical protein LOC100192596	-	5e-23	At4g03120	proline-rich family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.4965.1.A1_at	CF018804	cyclase/dehydrase family protein	-	2e-1	At5g46790	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.14021.1.S1_at	AY107096.1	ORMDL family protein	-	5e+0	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please select
0.40	48.5	Zm.12236.1.A1_at	CA830514	hypothetical protein LOC100194199	-	5e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	S.X.	H.G.	Please select
0.38	44.2	Zm.4001.1.A1_at	AY243475.1	superal1	-	7e-16	At1g17730	VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.0	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.4	97.5	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.5	97.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.8	96.6	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	38	Zm.471.1.A1_s_at	AF145756.1	tha9 protein	-	9e-2	At1g80090	CBS domain-containing protein	C.G.	S.X.	Please select
0.02	8e-2	38	Zm.1850.1.A1_at	CD484264	hypothetical protein LOC100273447	-	3e-8	At4g28730	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.10527.1.A1_at	CA403649	protein ABIL1	-	8e-1	At5g65480	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.578.1.S1_at	AF112150.1	MADS box protein 3	-	3e-3	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.19214.1.S1_at	CO523210	ankyrin repeat domain-containing protein 2	-	1e-2	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.18048.1.A1_at	CF624002	-	-	5e+0	At2g32580	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.13796.1.S1_at	AY104946.1	hypothetical protein LOC100272498	-	1e+1	At5g50650	WD-40 repeat family protein / St12p protein, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.12616.1.S1_at	BU050895	-	-	3e-7	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.11441.1.S1_at	AY672654.1	ethylene-responsive factor-like protein 1	-	2e+0	At3g14230	RAP2.2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At1g01810	839247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.psZS010xE01f_s_at	PsAffx.psZS010xE01f	-	-	2e+1	At5g50770	AtHSD6 (hydroxysteroid dehydrogenase 6)	C.G.	S.X.	Please select
0.41	3e-125	448	Hordeum vulgare	Contig9154_at	Contig9154	-	-	7e-1	At4g39340	unknown protein	C.G.	S.X.	Please select
0.39	5e-136	486	Oryza sativa	Os03g0177000	AK071368.1	-	GCN5-related N-acetyltransferase domain containingprotein	7e-1	At2g37340	RSZ33	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.8975.3.A1_at	CV262521	-	-	2e-2	At4g19200	proline-rich family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	8e-1	36	Triticum aestivum	TaAffx.55709.1.S1_x_at	CA662290	-	-	3e-1	At5g05230	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1615715_at	CF074514	-	-	3e+0	At3g52260	pseudouridine synthase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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