Gene omics information

Query gene ID	Zm.2946.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2946.1.S1_at	CF384431	-	-	1e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.16834.1.A1_at	AY109979.1	-	-	4e-1	At1g64370	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.7387.1.A1_at	BM078157	-	-	2e+1	At5g18403	-	S.X.	H.G.	Please select
0.50	65.7	Zm.14470.1.S1_a_at	CA400454	hypothetical protein LOC100279736 /// GTP-binding protein SAR1A	-	2e-19	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.2212.1.A1_at	AW313404	hypothetical protein LOC100276550	-	3e-2	At5g20910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.22	16.9	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.4	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	Zm.6322.1.A1_at	CO522931	hypothetical protein LOC100279236	-	3e-8	At4g38430	ROPGEF1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9407.1.A1_at	BM268507	plastid-lipid-associated protein 2	-	3e-2	At4g04020	FIB (FIBRILLIN)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.9100.1.A1_at	BM350640	-	-	1e+0	At5g12240	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6518.1.S1_at	AW927338	plastid-lipid-associated protein 2	-	2e-4	At4g04020	FIB (FIBRILLIN)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.14320.1.S1_at	BQ619478	hypothetical protein LOC100277165	-	1e-1	At1g65484	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.12366.1.S1_at	CA826895	-	-	1e+1	At4g32590	ferredoxin-related	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.10549.1.A1_at	BQ538239	hypothetical protein LOC100277053	-	1e+0	At5g35890	beta-galactosidase	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.455.1.A1_at	AI677194	hypothetical protein LOC100194007	-	3e+0	At1g44085	glycine-rich protein	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.455.1.S1_at	AI677194	Hypothetical protein LOC100194007	-	3e+0	At1g44085	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g41450	834146	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	32	Glycine max	GmaAffx.92767.1.S1_at	CF808492	-	-	2e-1	At5g37860	copper-binding family protein	C.G.	S.X.	Please select
0.07	6e-4	44	Hordeum vulgare	Contig24981_at	Contig24981	-	-	1e+0	At1g11750	CLPP6	C.G.	S.X.	Please select
0.15	1e-5	52	Oryza sativa	Os05g0466900	BX900706	-	Protein kinase domain containing protein	3e+0	At2g31230	ATERF15 (Ethylene-responsive element binding factor 15)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-3	42	Populus trichocarpa	PtpAffx.221436.1.S1_at	pmrna38323	-	-	4e+0	At3g45170	zinc finger (GATA type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	5e-6	52	Triticum aestivum	TaAffx.22938.1.S1_at	CA742921	-	-	3e+0	At4g37660	ribosomal protein L12 family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619861_s_at	CB835414	similar to putative protein	-	1e+0	At1g70270	ATP binding / DNA binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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