Gene omics information

Query gene ID Zm.2942.1.A1_at
Gene name replication factor C subunit 2
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8094.0Zm.2942.1.A1_atAY105337.1replication factor C subunit 2-8e-38At1g21690emb1968 (embryo defective 1968)S.X.H.G.
0.6077.8Zm.7122.1.A1_atAY111472.1--2e+0At1g35580CINV1 (cytosolic invertase 1)S.X.H.G.
0.6077.8Zm.405.1.A1_atAF037034.2hypothetical LOC541674-2e-1At5g05340peroxidase, putativeS.X.H.G.
0.5976.1Zm.2952.1.A1_a_atCF629660hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)S.X.H.G.
0.4352.8Zm.6785.1.A1_a_atBU037307S-adenosylmethionine decarboxylase proenzyme-3e-1At3g02468CPuORF9 (Conserved peptide upstream open reading frame 9)S.X.H.G.
0.4048.5Zm.13859.1.S1_atAF439724.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.598.1GSM205370B73 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.598.1GSM205374B73 13 DAP endosperm tissue biological replicate 3GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.597.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.697.6GSM205366B73 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.397.4GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.297.4GSM202320B73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.097.3GSM202310B73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.997.3GSM205376B73xMo17 13 DAP endosperm tissue biological replicate 3GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.997.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.797.2GSM202307B73xMo17 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.011e+034Zm.7293.1.S1_atBI675120--6e+0At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.021e+034Zm.4242.1.S1_atCD990106--9e-2At3g57240BG3 (BETA-1,3-GLUCANASE 3)C.G.S.X.
0.011e+034Zm.18322.1.A1_atCO527573hypothetical protein LOC100217265-1e+0At2g47890zinc finger (B-box type) family proteinC.G.S.X.
0.021e+034Zm.17568.1.S1_atBM079997hypothetical protein LOC100193097-1e+1At4g29660EMB2752 (EMBRYO DEFECTIVE 2752)C.G.S.X.
0.011e+034Zm.15629.1.S1_atCD441270--9e-4At3g04590DNA-binding family proteinC.G.S.X.
0.015e+032Zm.8642.1.S1_atBM075042--5e-15At1g53040unknown proteinC.G.S.X.
0.015e+032Zm.7306.1.S1_atAB044567.1Ca2+/H+ antiporter-7e-11At3g13320CAX2 (CATION EXCHANGER 2)C.G.S.X.
0.025e+032Zm.7012.9.A1_atBE123180--3e+0At2g27510ATFD3 (ferredoxin 3)C.G.S.X.
0.015e+032Zm.7056.6.A1_atCF051906RWD domain-containing protein 1-1e-2At3g52550-C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.318e-38159Arabidopsis thalianaAt1g21690838771emb1968 (embryo defective 1968)F:in 6 functions;P:embryonic development ending in seed dormancy;C:DNA replication factor C complex, nucleolus;BOMFAPV---C.G.S.X.
0.033e-448Glycine maxPsAffx.C182000007_atPsAffx.C182000007--6e-1At3g21840ASK7 (ARABIDOPSIS SKP1-LIKE 7)C.G.S.X.
0.5401053Hordeum vulgareContig6544_atContig6544--1e-76At1g21690emb1968 (embryo defective 1968)C.G.S.X.
0.6001061Oryza sativaOs12g0176500AB045677.1--3e-80At1g21690emb1968 (embryo defective 1968)C.G.S.X.
0.365e-49196Populus trichocarpaPtp.5419.1.S1_atCK099258hypothetical protein-2e-130At1g21690emb1968 (embryo defective 1968)C.G.S.X.
0.5501102Triticum aestivumTa.6784.1.S1_atCK151755--6e-85At1g21690emb1968 (embryo defective 1968)C.G.S.X.
0.167e-2097Vitis vinifera1610051_atCF512468hypothetical protein LOC100245502-4e-17At1g21690emb1968 (embryo defective 1968)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage