Gene omics information

Query gene ID	Zm.2942.1.A1_at
Gene name	replication factor C subunit 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.2942.1.A1_at	AY105337.1	replication factor C subunit 2	-	8e-38	At1g21690	emb1968 (embryo defective 1968)	S.X.	H.G.	Please select
0.60	77.8	Zm.7122.1.A1_at	AY111472.1	-	-	2e+0	At1g35580	CINV1 (cytosolic invertase 1)	S.X.	H.G.	Please select
0.60	77.8	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select
0.59	76.1	Zm.2952.1.A1_a_at	CF629660	hypothetical protein LOC100192920	-	2e-3	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	S.X.	H.G.	Please select
0.43	52.8	Zm.6785.1.A1_a_at	BU037307	S-adenosylmethionine decarboxylase proenzyme	-	3e-1	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	S.X.	H.G.	Please select
0.40	48.5	Zm.13859.1.S1_at	AF439724.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	1e-12	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	98.1	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.5	98.1	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.3	97.4	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.0	97.3	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.9	97.3	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.9	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Zm.7293.1.S1_at	BI675120	-	-	6e+0	At3g10920	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4242.1.S1_at	CD990106	-	-	9e-2	At3g57240	BG3 (BETA-1,3-GLUCANASE 3)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18322.1.A1_at	CO527573	hypothetical protein LOC100217265	-	1e+0	At2g47890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.17568.1.S1_at	BM079997	hypothetical protein LOC100193097	-	1e+1	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15629.1.S1_at	CD441270	-	-	9e-4	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.8642.1.S1_at	BM075042	-	-	5e-15	At1g53040	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.7306.1.S1_at	AB044567.1	Ca2+/H+ antiporter	-	7e-11	At3g13320	CAX2 (CATION EXCHANGER 2)	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.7012.9.A1_at	BE123180	-	-	3e+0	At2g27510	ATFD3 (ferredoxin 3)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.7056.6.A1_at	CF051906	RWD domain-containing protein 1	-	1e-2	At3g52550	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	8e-38	159	Arabidopsis thaliana	At1g21690	838771	emb1968 (embryo defective 1968)	F:in 6 functions;P:embryonic development ending in seed dormancy;C:DNA replication factor C complex, nucleolus;BOMFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-4	48	Glycine max	PsAffx.C182000007_at	PsAffx.C182000007	-	-	6e-1	At3g21840	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	C.G.	S.X.	Please select
0.54	0	1053	Hordeum vulgare	Contig6544_at	Contig6544	-	-	1e-76	At1g21690	emb1968 (embryo defective 1968)	C.G.	S.X.	Please select
0.60	0	1061	Oryza sativa	Os12g0176500	AB045677.1	-	-	3e-80	At1g21690	emb1968 (embryo defective 1968)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	5e-49	196	Populus trichocarpa	Ptp.5419.1.S1_at	CK099258	hypothetical protein	-	2e-130	At1g21690	emb1968 (embryo defective 1968)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	0	1102	Triticum aestivum	Ta.6784.1.S1_at	CK151755	-	-	6e-85	At1g21690	emb1968 (embryo defective 1968)	C.G.	S.X.	Please select
0.16	7e-20	97	Vitis vinifera	1610051_at	CF512468	hypothetical protein LOC100245502	-	4e-17	At1g21690	emb1968 (embryo defective 1968)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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