Gene omics information

Query gene ID	Zm.2928.1.S1_at
Gene name	ATP binding protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.2928.1.S1_at	BG265909	ATP binding protein	-	1e+1	At5g35090	unknown protein	S.X.	H.G.	Please select
0.89	96.8	Zm.5989.1.A1_at	AI666066	-	-	3e-1	At4g24960	ATHVA22D	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.225.1.S1_at	AI670237	-	-	1e+1	At5g09470	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	S.X.	H.G.	Please select
0.67	85.8	Zm.8110.1.A1_at	CF623866	hypothetical protein LOC100278802	-	3e-25	At5g49820	emb1879 (embryo defective 1879)	S.X.	H.G.	Please select
0.64	81.7	Zm.13523.1.A1_at	AY108425.1	-	-	6e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.18525.1.A1_at	CO530497	-	-	1e-4	At5g28150	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.5851.15.A1_x_at	AI759130	-	-	9e-1	At2g04031	-	S.X.	H.G.	Please select
0.38	44.2	Zm.18516.1.A1_a_at	CO526437	-	-	2e+0	At5g55570	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	Zm.2870.1.A1_x_at	AW076473	-	-	1e-19	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.2870.1.A1_at	AW076473	-	-	1e-19	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.12864.1.S1_at	CA400624	nuclear transcription factor Y subunit A-3	-	1e-11	At1g72830	NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)	C.G.	S.X.	Please select
0.05	1e+0	32	ZmAffx.743.1.A1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	C.G.	S.X.	Please select
0.05	1e+0	32	ZmAffx.743.1.S1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.9262.1.A1_at	BM267680	-	-	4e+0	At5g49240	APRR4 (PSEUDO-RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.3664.1.S1_at	CF630053	hypothetical protein LOC100192489	-	1e-15	At5g45430	protein kinase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.12202.1.A1_at	BG549493	Galactinol synthase 1	-	3e-5	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select
0.03	6e+0	30	Zm.965.1.S1_at	CA828949	hypothetical protein LOC100277149	-	3e-4	At1g80890	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g35090	833460	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.48094.1.A1_at	AI988060	-	-	6e+0	At5g36080	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	Contig1338_s_at	Contig1338	-	-	2e-73	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.11	2e-37	157	Oryza sativa	Os08g0249100	AK111692.1	-	UspA domain containing protein	6e-12	At5g65530	protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.202623.1.S1_at	pmrna5243	hypothetical protein	-	4e+0	At1g27840	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.37341.1.S1_at	BJ279761	-	-	4e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1617094_at	BQ797397	hypothetical protein LOC100262837	-	1e-15	At5g35410	SOS2 (SALT OVERLY SENSITIVE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage