Gene omics information

Query gene ID	Zm.2925.3.A1_at
Gene name	Ubiquitin
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.2925.3.A1_at	CF002413	Ubiquitin	-	4e-41	At2g47110	UBQ6	S.X.	H.G.	Please select
0.50	65.7	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	S.X.	H.G.	Please select
0.48	61.3	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	S.X.	H.G.	Please select
0.46	58.4	Zm.5396.1.A1_at	AY112168.1	hypothetical protein LOC100216913	-	8e-5	At1g53645	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.14	7.7	Zm.17816.2.A1_at	CK144883	-	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select
0.12	5.9	Zm.12958.1.A1_at	CA402421	hypothetical protein LOC100217276	-	9e+0	At5g43245	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	94.7	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.3	94.7	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.3	94.7	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.7	93.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-100	365	Zm.15971.1.S1_at	CF638101	40S ribosomal protein S27a	-	1e-44	At2g47110	UBQ6	C.G.	S.X.	Please select
0.62	2e-99	361	Zm.2925.2.S1_at	BG836389	-	-	4e-63	At2g47110	UBQ6	C.G.	S.X.	Please select
0.15	9e-62	236	Zm.7727.1.S1_s_at	CK986121	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	5e-129	At5g20620	UBQ4	C.G.	S.X.	Please select
0.16	6e-60	230	Zm.2925.1.A1_at	BM338886	polyubiquitin containing 7 ubiquitin monomers	-	1e-160	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.19	2e-59	228	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.25	3e-52	204	Zm.16530.1.A1_at	BM953023	-	-	3e-51	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.27	2e-50	198	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	C.G.	S.X.	Please select
0.24	8e-50	196	Zm.16530.2.S1_a_at	BM953031	-	-	1e-69	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.24	8e-50	196	Zm.16530.2.S1_x_at	BM953031	-	-	1e-69	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	4e-41	169	Arabidopsis thaliana	At2g47110	819323	UBQ6	polyubiquitin gene	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.49	1e-85	317	Glycine max	GmaAffx.93136.1.S1_x_at	CF808861	-	-	1e-52	At2g47110	UBQ6	C.G.	S.X.	Please select
0.53	2e-103	375	Hordeum vulgare	Contig1041_x_at	Contig1041	-	-	1e-68	At2g47110	UBQ6	C.G.	S.X.	Please select
0.46	1e-98	361	Oryza sativa	Os05g0160200	L31941.1	-	The start codon is not identified.	6e-74	At2g47110	UBQ6	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	1e-38	161	Populus trichocarpa	PtpAffx.675.6.S1_at	CF235452	hypothetical protein	-	4e-35	At2g47110	UBQ6	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	1e-103	377	Triticum aestivum	Ta.20839.2.S1_x_at	CA617164	-	-	2e-66	At2g47110	UBQ6	C.G.	S.X.	Please select
0.40	4e-63	240	Vitis vinifera	1611904_at	CB007429	hypothetical protein LOC100247863	-	1e-50	At2g47110	UBQ6	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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