Gene omics information

Query gene ID	Zm.2922.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.2922.1.A1_at	CO532813	-	-	9e+0	At4g21865	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.12555.1.A1_x_at	AI673922	-	-	4e+0	At4g28170	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.12345.2.S1_at	AY111982.1	-	-	4e+0	At5g08050	-	S.X.	H.G.	Please select
0.46	58.4	Zm.6213.1.A1_at	CA400757	hypothetical protein LOC100216861	-	6e+0	At5g22210	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.5018.3.A1_at	AI668145	-	-	9e-1	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.2	97.4	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.7	97.2	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Zm.2104.1.A1_at	BM266401	hypothetical protein LOC100279029	-	2e+0	At3g62880	ATOEP16-4	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2244.1.S1_a_at	CF348841	hypothetical protein LOC100279724	-	6e-1	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.1993.1.S1_at	BQ539120	eyes absent-like protein	-	2e-1	At5g65230	AtMYB53 (myb domain protein 53)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.11873.1.A1_at	BM381425	Sulfate transporter	-	4e+0	At5g19315	-	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.9511.1.A1_at	BM349561	diacylglycerol kinase	-	4e-1	At3g51240	F3H (FLAVANONE 3-HYDROXYLASE)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.7307.1.A1_at	AF311224.1	C2H2 zinc-finger protein	-	5e-18	At2g27100	SE (SERRATE)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.7307.1.S1_at	AI947696	C2H2 zinc-finger protein	-	5e-18	At2g27100	SE (SERRATE)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.6743.2.S1_at	AY104873.1	permease I	-	2e-23	At5g62890	permease, putative	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.649.1.S1_at	AY032604.1	ADP-glucose pyrophosphorylase small subunit	-	5e-43	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e+0	32	Arabidopsis thaliana	At4g21865	828275	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.60577.2.S1_at	BQ741129	-	-	3e-6	At3g46540	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	HVSMEg0003J21r2_at	HVSMEg0003J21r2	-	-	1e+0	At3g60020	ASK5 (ARABIDOPSIS SKP1-LIKE 5)	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os02g0630300	AK059045.1	-	2OG-Fe(II) oxygenase domain containing protein	4e-3	At1g06650	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.23657.2.S1_s_at	DN487900	hypothetical protein	-	5e-2	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	9e+0	32	Triticum aestivum	TaAffx.9033.1.S1_at	CA615484	-	-	9e-1	At3g03070	NADH-ubiquinone oxidoreductase-related	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1610383_at	CF203837.1	-	-	5e-19	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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