Gene omics information

Query gene ID	Zm.2912.1.A1_at
Gene name	hypothetical protein LOC100272765
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.2912.1.A1_at	CF244896	hypothetical protein LOC100272765	-	1e-82	At1g10430	PP2A-2	S.X.	H.G.	Please select
0.75	90.8	Zm.3900.2.A1_at	BM267197	hypothetical protein LOC100191188	-	1e-17	At3g59580	RWP-RK domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9878.1.A1_at	BM347591	hypothetical protein LOC100191208	-	5e+0	At3g17910	SURF1 (SURFEIT 1)	S.X.	H.G.	Please select
0.56	74.4	Zm.4767.2.S1_at	CA830816	glutamyl-tRNA synthetase, cytoplasmic	-	2e-5	At5g26710	glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.19094.1.S1_at	CO522607	hypothetical protein LOC100279575	-	2e-4	At1g14540	anionic peroxidase, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.1706.1.A1_at	BF728433	hypothetical protein LOC100276850	-	1e+0	At5g47870	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.4034.1.A1_at	CF972567	-	-	3e-7	At1g55680	WD-40 repeat family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.9023.1.A1_at	AY109177.1	-	-	4e-14	At4g02480	AAA-type ATPase family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13794.1.S1_at	AY104961.1	-	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	811	Zm.5141.1.A1_at	CF628146	-	-	2e-60	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select
0.27	2e-91	335	Zm.5141.2.A1_at	AI691820	hypothetical protein LOC100191902	-	6e-25	At1g10430	PP2A-2	C.G.	S.X.	Please select
0.27	2e-91	335	Zm.5141.2.A1_a_at	AI691820	hypothetical protein LOC100191902 /// hypothetical protein LOC100273101	-	6e-25	At1g10430	PP2A-2	C.G.	S.X.	Please select
0.10	4e-13	75	Zm.9014.2.A1_at	AI714470	PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2	-	2e-68	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.11	2e-11	69	Zm.9014.1.S1_a_at	CK347434	PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2 /// PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2	-	7e-100	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.11	2e-11	69	Zm.9014.1.S1_at	CK347434	-	-	7e-100	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.05	1e-3	44	Zm.5378.1.A1_at	CA404486	-	-	1e-39	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.6258.1.A1_at	CF626264	PP2Ac-5 - Phosphatase 2A isoform 5 belonging to family 2	-	2e-21	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.7598.1.A1_at	CF629653	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	1e-82	307	Arabidopsis thaliana	At1g10430	837583	PP2A-2	Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.51	4e-117	422	Glycine max	Gma.10798.1.S1_at	CD401168	-	-	2e-158	At1g10430	PP2A-2	C.G.	S.X.	Please select
0.62	0	1053	Hordeum vulgare	Contig7022_at	Contig7022	-	-	3e-71	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select
0.57	0	646	Oryza sativa	Os02g0217600	AK060905.1	-	Protein phosphatase 2A	4e-73	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.43	1e-74	282	Populus trichocarpa	Ptp.4495.3.S1_at	BU810858	hypothetical protein	-	3e-77	At1g10430	PP2A-2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	0	1039	Triticum aestivum	Ta.11307.1.S1_a_at	CK206732	-	-	3e-59	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select
0.17	4e-43	174	Vitis vinifera	1621935_at	CD802055	-	-	2e-136	At1g10430	PP2A-2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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