Gene omics information

Query gene ID	Zm.2814.1.A1_at
Gene name	zinc finger C-x8-C-x5-C-x3-H type family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.2814.1.A1_at	CB833930	zinc finger C-x8-C-x5-C-x3-H type family protein	-	3e+0	At5g08100	L-asparaginase / L-asparagine amidohydrolase	S.X.	H.G.	Please select
0.55	71.6	Zm.15106.1.A1_at	AI065782	-	-	7e-1	At2g29360	tropinone reductase, putative / tropine dehydrogenase, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.7949.1.A1_at	BQ538368	hypothetical protein LOC100192737	-	2e+0	At2g28480	RNA binding	S.X.	H.G.	Please select
0.19	12.8	Zm.11379.1.A1_at	CB351163	-	-	5e+0	At2g29995	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.3630.2.S1_at	CO531431	36.4 kDa proline-rich protein	-	3e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	S.X.	H.G.	Please select
0.11	5.3	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.6	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	Zm.759.1.A1_at	BM072920	-	-	5e-5	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.4630.2.A1_at	CK347497	hypothetical protein LOC100273246	-	8e-7	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.4630.2.A1_a_at	CK347497	hypothetical protein LOC100273246 /// vacuolar ATP synthase subunit C	-	8e-7	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.16941.1.S1_at	AY105148.1	-	-	2e+1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please select
0.01	4e-1	34	Zm.1613.1.A1_at	AI001332	-	-	1e-7	At4g39960	DNAJ heat shock family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6443.1.A1_at	CA404297	hypothetical protein AY107910	-	4e-25	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4630.1.S1_at	CF635901	vacuolar ATP synthase subunit C	-	2e-8	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.10381.1.S1_at	CO521909	hypothetical protein LOC100272977	-	7e-23	At2g46230	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.10258.1.S1_at	BM501769	S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ thiopurine S-methyltransferase	-	2e-7	At2g43920	thiol methyltransferase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g08100	830704	L-asparaginase / L-asparagine amidohydrolase	F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.71113.1.A1_at	AW349181	-	-	6e-1	At4g02200	drought-responsive family protein	C.G.	S.X.	Please select
0.23	1e-4	46	Hordeum vulgare	Contig22514_at	Contig22514	-	-	8e-2	At5g59290	UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)	C.G.	S.X.	Please select
0.06	2e-6	54	Oryza sativa	Os04g0663200	AK105958.1	-	-	7e-1	At5g38020	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.18367.1.A1_at	CV250938	-	-	1e+1	Atcg00050	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.25317.1.S1_at	CA702628	-	-	1e+1	At5g35320	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	28	Vitis vinifera	1622603_at	CB344263	hypothetical protein LOC100247693	-	3e-19	At3g25400	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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