Gene omics information

Query gene ID	Zm.281.1.S1_s_at
Gene name	hypothetical LOC542299
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.6	Zm.281.1.S1_s_at	U06831.1	hypothetical LOC542299	-	2e+0	At5g55170	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	S.X.	H.G.	Please select
0.46	58.4	Zm.12735.1.A1_at	AI491263	hypothetical protein LOC100274318	-	6e-14	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	S.X.	H.G.	Please select
0.44	55.7	Zm.1042.1.A1_at	AY105661.1	-	-	3e-1	At2g25340	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)	S.X.	H.G.	Please select
0.42	51.3	Zm.10072.1.A1_at	BM378946	50S ribosomal protein L1	-	9e-19	At3g63490	ribosomal protein L1 family protein	S.X.	H.G.	Please select
0.41	49.7	Zm.4815.1.A1_at	AI746001	-	-	1e+0	At5g14170	CHC1	S.X.	H.G.	Please select
0.41	49.7	Zm.3867.1.S1_at	CA399515	hypothetical protein LOC100273968	-	1e-3	At4g34910	DEAD/DEAH box helicase, putative (RH16)	S.X.	H.G.	Please select
0.37	42.3	Zm.4776.2.A1_at	CF026718	pyruvate dehydrogenase E1 component alpha subunit	-	1e-39	At1g59900	AT-E1 ALPHA	S.X.	H.G.	Please select
0.37	42.3	Zm.5692.1.S1_at	AI629972	hypothetical protein LOC100276119	-	1e-12	At3g12150	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.442.1.S1_at	AF104924.2	unconventional myosin heavy chain	-	5e-48	At5g20490	XIK	S.X.	H.G.	Please select
0.36	41.3	Zm.9183.1.A1_at	BM331963	-	-	7e-2	At1g77810	galactosyltransferase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.2	100.0	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
31.9	99.8	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
30.2	99.8	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
23.3	99.5	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
17.1	99.1	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
15.8	99.0	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
9.6	98.3	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
9.4	98.3	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
7.6	97.9	GSM253253	ZM_24h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.1	97.7	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1701	Zm.281.1.S1_at	U06831.1	hypothetical LOC542299	-	2e+0	At5g55170	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	C.G.	S.X.	Please select
0.60	0	678	Zm.16226.1.A1_at	BM348522	Hypothetical LOC542299	-	4e-1	At2g20180	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	C.G.	S.X.	Please select
0.11	1e-15	83	ZmAffx.1198.1.A1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	C.G.	S.X.	Please select
0.11	1e-15	83	ZmAffx.1198.1.S1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	C.G.	S.X.	Please select
0.02	2e-4	46	Zm.10159.1.A1_at	BM350333	thaumatin-like protein	-	1e-1	At4g14060	major latex protein-related / MLP-related	C.G.	S.X.	Please select
0.07	3e-3	42	Zm.8726.1.A1_at	BM266883	thaumatin-like protein	-	7e+0	At3g25400	-	C.G.	S.X.	Please select
0.12	1e-2	40	Zm.6659.1.A1_at	BM075306	pathogenesis related protein-5	-	6e-1	At1g32763	-	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.1756.1.S1_a_at	AF271237.1	casein kinase II alpha subunit	-	3e-123	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.569.1.A1_at	AF239819.1	protein kinase CK2 catalytic subunit CK2 alpha-3	-	3e-96	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g55170	835610	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-15	83	Glycine max	GmaAffx.91091.1.A1_at	CF806816	-	-	2e-3	At1g75050	-	C.G.	S.X.	Please select
0.20	2e-20	99	Hordeum vulgare	Contig2790_s_at	Contig2790	thaumatin-like protein TLP7	-	3e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	C.G.	S.X.	Please select
0.44	4e-49	196	Oryza sativa	Os03g0663500	U77656.1	-	Thaumatin, pathogenesis-related family protein	7e+0	At3g25400	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	7e-1	36	Populus trichocarpa	PtpAffx.2271.1.S1_s_at	CA933996	hypothetical protein	-	1e-4	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	8e-37	155	Triticum aestivum	TaAffx.108908.1.S1_x_at	CA684616	-	-	1e+0	At2g36450	HRD (HARDY)	C.G.	S.X.	Please select
0.05	2e-4	46	Vitis vinifera	1616413_at	AF003007.1	VVTL1	-	4e-5	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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