Gene omics information

Query gene ID	Zm.2768.1.A1_at
Gene name	Hypothetical protein LOC100193535
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	S.X.	H.G.	Please select
0.61	79.5	Zm.19240.1.A1_at	CF624777	DNA binding protein	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	S.X.	H.G.	Please select
0.43	52.8	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	S.X.	H.G.	Please select
0.36	41.3	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	98.3	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.5	95.1	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.1	94.3	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	0	692	Zm.13766.1.S1_at	CF630318	annexin A4	-	8e-1	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.18133.1.S1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.13153.1.A1_at	BI993275	RHM1	-	2e-32	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6859.1.A1_at	CF630666	vacuolar ATP synthase subunit B	-	2e-128	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6038.1.A1_at	CD441025	-	-	8e-7	At5g56160	transporter	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5267.1.A1_at	BM340432	copine-1	-	1e-11	At3g01650	RGLG1 (RING domain Ligase1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.4762.1.A1_at	BG874087	-	-	2e-6	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.16325.1.A1_at	CF243460	hypothetical protein LOC100276031	-	3e-3	At1g29840	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g04760	830354	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	Gma.2379.2.S1_at	BM732734	-	-	1e+0	At5g21940	unknown protein	C.G.	S.X.	Please select
0.24	1e-70	266	Hordeum vulgare	Contig8475_at	Contig8475	-	-	3e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.28	6e-66	252	Oryza sativa	Os09g0394900	AK061821.1	-	Annexin-like protein	3e+0	At5g23640	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-5	50	Populus trichocarpa	PtpAffx.11226.1.S1_at	CV274273	-	-	2e-1	At1g02830	60S ribosomal protein L22 (RPL22A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	4e-38	159	Triticum aestivum	Ta.13966.3.S1_a_at	CA639168	-	-	1e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1610689_at	CB969755	hypothetical LOC100252368	-	8e-1	At1g63055	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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