Gene omics information

Query gene ID	Zm.2758.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.34	37.2	Zm.2758.1.A1_at	AW067110	-	-	2e-6	At2g25730	unknown protein	S.X.	H.G.	Please select
0.73	89.9		-	-	-	0			S.X.	H.G.	Please select
0.63	81.1	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.57	75.1	Zm.5008.1.A1_at	AY108557.1	hypothetical protein LOC100275589	-	2e-29	At5g54870	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.3623.1.S1_at	BG873827	hypothetical protein LOC100216808	-	7e+0	At5g52440	HCF106	S.X.	H.G.	Please select
0.50	65.7	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	S.X.	H.G.	Please select
0.36	41.3	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	96.8	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.4	96.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-5	48	Zm.18545.1.A1_at	CO533794	hypothetical protein LOC100276045	-	2e+0	At2g35370	GDCH	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.704.1.S1_at	U15781.1	xyloglucan endotransglycosylase homolog1	-	3e-6	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2825.2.A1_at	AY103788.1	-	-	1e-9	At2g29140	APUM3 (Arabidopsis Pumilio 3)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.19119.1.A1_at	CO521073	hypothetical protein LOC100274089	-	1e-11	At1g68640	PAN (PERIANTHIA)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.18434.1.A1_at	CF631178	hypothetical protein LOC100193586	-	3e+0	At4g19430	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.16983.1.A1_at	AY107293.1	-	-	2e+0	At3g14670	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.1594.1.S1_at	AF532781.1	hypothetical LOC541975	-	4e-27	At3g18290	EMB2454 (embryo defective 2454)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.14032.1.A1_at	BQ538211	hypothetical protein LOC100273956 /// hypothetical protein LOC100277769 /// hypothetical protein LOC100280061	-	1e+1	At4g39560	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.12649.1.A1_at	CF007744	F-box domain containing protein	-	8e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-6	54	Arabidopsis thaliana	At2g25730	817114	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	2e-38	161	Glycine max	GmaAffx.70742.1.S1_at	CA799078	-	-	2e-40	At2g25730	unknown protein	C.G.	S.X.	Please select
0.26	3e-90	331	Hordeum vulgare	Contig20812_at	Contig20812	-	-	6e+0	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	C.G.	S.X.	Please select
0.15	4e-77	289	Oryza sativa	Os.8689.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	1e-33	145	Populus trichocarpa	Ptp.463.1.S1_at	CK089228	hypothetical protein	-	2e-31	At2g25730	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	5e-69	262	Triticum aestivum	TaAffx.36812.1.S1_at	BJ313336	-	-	4e+0	At5g45490	disease resistance protein-related	C.G.	S.X.	Please select
0.03	2e-1	36	Vitis vinifera	1621165_at	CB979035	-	-	2e+0	At2g38350	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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