Gene omics information

Query gene ID	Zm.2715.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2715.1.A1_at	AW066985	-	-	5e+0	At4g12990	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.14513.2.A1_at	BM380808	hypothetical protein LOC100272299	-	2e-43	At1g09200	histone H3	S.X.	H.G.	Please select
0.40	48.5	Zm.10175.1.A1_at	BM379420	hypothetical protein LOC100279966 /// pathogenesis-related protein 10	-	7e+0	At4g18692	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.13530.1.A1_at	AY108362.1	-	-	2e-6	At1g30270	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	S.X.	H.G.	Please select
0.30	29.8	Zm.6630.2.S1_at	CD447067	hypothetical protein LOC100193888	-	3e-2	At1g15750	TPL (TOPLESS)	S.X.	H.G.	Please select
0.15	8.6	Zm.4823.1.A1_at	CD999070	-	-	4e-23	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.5	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Zm.19111.1.A1_at	CO531150	-	-	4e-4	At3g17940	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.13203.1.S1_at	W21618	COP9 signalosome complex subunit 1	-	8e-7	At3g61140	FUS6 (FUSCA 6)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.955.1.A1_at	BM339428	e2 protein	-	2e-6	At3g27100	-	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.17654.1.S1_at	CK369051	hypothetical protein LOC100193617	-	2e-17	At2g31660	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.15614.1.S1_at	CD436993	-	-	2e-1	At3g19890	F-box family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.15510.1.A1_at	CD441066	mitochondrial carrier YMR166C	-	2e-7	At1g74240	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.15510.1.S1_at	CD440173	-	-	2e-7	At1g74240	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.11761.1.A1_at	BM380541	-	-	1e+1	At4g10170	synaptobrevin-related family protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.8905.1.A1_at	BM075564	-	-	1e-1	At5g16030	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At4g12990	826912	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	Gma.2887.1.S1_s_at	CD417784	-	-	1e-23	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.21	3e-24	111	Hordeum vulgare	Contig15730_at	Contig15730	-	-	5e+0	At1g11755	LEW1 (LEAF WILTING 1)	C.G.	S.X.	Please select
0.12	1e-60	234	Oryza sativa	Os01g0138900	AK072417.1	-	Mandelate racemase/muconate lactonizing enzymefamily protein	5e-19	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-6	54	Populus trichocarpa	PtpAffx.138414.1.S1_at	CX657512	hypothetical protein	-	6e-9	At3g18270	CYP77A5P	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	4e-53	208	Triticum aestivum	Ta.5248.2.S1_x_at	CD373899	-	-	2e+0	At2g30985	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1619910_at	CF405078	-	-	2e-1	At3g27410	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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