Gene omics information

Query gene ID	Zm.2713.2.S1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.2713.2.S1_a_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	S.X.	H.G.	Please select
0.80	94.0	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.737.2.A1_at	AI746142	-	-	4e-6	At5g60360	AALP (Arabidopsis aleurain-like protease)	S.X.	H.G.	Please select
0.61	79.5	Zm.17179.1.A1_at	CK368850	-	-	9e-14	At1g27740	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.11598.1.A1_at	BM379212	-	-	1e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.2602.1.S1_at	AY109922.1	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	S.X.	H.G.	Please select
0.53	69.1	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	S.X.	H.G.	Please select
0.53	69.1	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select
0.52	67.3	Zm.2906.1.S1_at	AY110115.1	somatic embryogenesis receptor-like kinase2	-	2e-51	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.5	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM375797	Deep-sowing 10d treatment UCZ, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.0	96.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	Zm.2713.2.A1_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	C.G.	S.X.	Please select
0.31	6e-160	561	Zm.2713.1.A1_at	AY103960.1	hypothetical protein LOC100280013	-	2e-79	At5g60790	ATGCN1	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.4768.1.A1_at	AY107116.1	hypothetical protein LOC100192636	-	5e-30	At1g64550	ATGCN3	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9570.1.A1_a_at	BM337218	hypothetical protein LOC100279354	-	2e+1	Atcg00330	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9570.1.A1_x_at	BM337218	hypothetical protein LOC100279354	-	2e+1	Atcg00330	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.7582.1.A1_at	BM073867	hypothetical protein LOC100216795	-	2e+0	At5g03440	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.522.1.S1_at	AF200531.1	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4423.1.A1_at	AI714792	hypothetical protein LOC100191726	-	1e-3	At4g31170	protein kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.227.1.S2_x_at	AY109649.1	Ferredoxin-sulfite reductase precursor	-	2e-12	At5g04590	SIR	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-30	133	Arabidopsis thaliana	At5g60790	836200	ATGCN1	member of GCN subfamily	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	2e-8	59	Glycine max	GmaAffx.92314.1.S1_at	CF808039	-	-	1e-7	At5g60790	ATGCN1	C.G.	S.X.	Please select
0.28	9e-73	272	Hordeum vulgare	Contig2625_at	Contig2625	-	-	2e-60	At5g60790	ATGCN1	C.G.	S.X.	Please select
0.27	7e-86	317	Oryza sativa	Os08g0564100	AK063258.1	-	ATP-binding cassette, sub-family F, member 2 (Ironinhibited ABC transporter 2) (HUSSY-18)	4e-71	At5g60790	ATGCN1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	9e-20	97	Populus trichocarpa	Ptp.7329.1.S1_at	CV280883	ABC transporter family protein	-	2e-60	At5g60790	ATGCN1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	5e-73	274	Triticum aestivum	Ta.28668.1.S1_at	CK162832	-	-	2e-70	At5g60790	ATGCN1	C.G.	S.X.	Please select
0.27	4e-40	163	Vitis vinifera	1618243_at	CF604301	hypothetical protein LOC100251610	-	4e-102	At5g60790	ATGCN1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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