Gene omics information

Query gene ID	Zm.2707.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2707.1.S1_at	BG842199	-	-	2e-1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select
0.22	16.9	Zm.13315.1.S1_at	CA827618	pairing protein meu13-like	-	9e-15	At1g13330	-	S.X.	H.G.	Please select
0.06	2.3	Zm.15605.1.S1_at	CA402349	isopenicillin N epimerase	-	2e-2	At3g62130	epimerase-related	S.X.	H.G.	Please select
0.05	1.9	Zm.17740.1.A1_at	CK370696	hypothetical protein LOC100277215	-	6e+0	At3g29797	-	S.X.	H.G.	Please select
0.03	1.1	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	S.X.	H.G.	Please select
0.03	1.1	ZmAffx.988.1.S1_at	AI834703	-	-	3e+0	At5g50562	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.7	100.0	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
33.2	99.9	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
23.2	99.5	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
20.2	99.3	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
17.3	99.1	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
16.5	99.0	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
15.2	98.9	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
14.2	98.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.7	98.1	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-60	232	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.35	2e-51	202	Zm.1616.1.A1_at	BM380022	plasma membrane-bound peroxidase 3-1	-	6e-2	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.24	4e-22	105	Zm.10660.1.A1_at	CF634854	Plasma membrane-bound peroxidase 2b	-	8e-3	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.17	9e-14	77	Zm.9856.1.S1_at	BM381423	hypothetical protein LOC100272496	-	4e-2	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.06	5e-12	71	Zm.2505.1.S1_at	BG841722	hypothetical protein LOC100216859	-	4e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.04	3e-10	65	Zm.16643.1.S1_at	CK144844	peroxidase 27	-	3e-3	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.04	1e-9	63	Zm.11650.1.A1_at	BM379683	hypothetical protein LOC100192105	-	4e+0	At2g12405	unknown protein	C.G.	S.X.	Please select
0.02	8e-8	57	Zm.5170.1.S1_at	CF349172	hypothetical protein LOC100216995	-	1e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.04	8e-8	57	Zm.4338.1.A1_at	CF638243	peroxidase 72	-	1e-8	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-1	38	Arabidopsis thaliana	At5g05340	830416	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-9	63	Glycine max	Gma.17816.2.S1_s_at	BE020641	-	-	2e-10	At1g68850	peroxidase, putative	C.G.	S.X.	Please select
0.48	6e-43	174	Hordeum vulgare	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	C.G.	S.X.	Please select
0.44	3e-66	254	Oryza sativa	Os07g0677100	AF014468.1	-	Peroxidase	2e-4	At5g05340	peroxidase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e-5	50	Populus trichocarpa	PtpAffx.211356.1.S1_at	pmrna22260	hypothetical protein	-	1e-4	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	8e-53	208	Triticum aestivum	TaAffx.116491.1.S1_at	CA605687	-	-	3e-2	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.05	8e-7	54	Vitis vinifera	1609321_at	CA817974	hypothetical protein LOC100241916	-	7e-7	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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