Gene omics information

Query gene ID	Zm.2688.2.A1_a_at
Gene name	hypothetical protein LOC100273855
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.2688.2.A1_a_at	CK986048	hypothetical protein LOC100273855	-	5e+0	At3g25120	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select
0.89	96.8	Zm.9335.1.A1_at	BM268136	hypothetical protein LOC100273605	-	2e-2	At2g40580	protein kinase family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1199.1.S1_at	BE057023	-	-	5e-2	At3g48610	phosphoesterase family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.6751.1.A1_at	BG873976	hypothetical protein LOC100274772	-	4e-5	At3g62580	-	S.X.	H.G.	Please select
0.60	77.8	Zm.10557.1.A1_a_at	CK347884	hypothetical protein LOC100280344 /// agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.932.1.A1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.8149.2.A1_at	BM072723	-	-	6e+0	At4g14640	CAM8 (CALMODULIN 8)	S.X.	H.G.	Please select
0.38	44.2	Zm.8734.1.A1_at	CA403611	hypothetical protein LOC100275773	-	3e-16	At2g42230	tubulin-specific chaperone C-related	S.X.	H.G.	Please select
0.33	36.0	Zm.17775.1.S1_at	CF627602	50S ribosomal protein L12-2	-	5e+0	At4g14358	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
7.6	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Zm.13723.1.S1_at	CO527387	-	-	2e+0	At2g22201	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.7328.1.S1_at	CF628905	kinesin-like protein1	-	1e-13	At4g24170	kinesin motor family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5656.1.A1_at	BG837879	PAS2	-	2e-13	At5g10480	PAS2 (PASTICCINO 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3889.2.A1_a_at	BM335204	hypothetical protein LOC100194114	-	9e-12	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2656.1.S1_at	BM379046	Hypothetical LOC542518	-	9e-40	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please select
0.01	8e+0	30	ZmAffx.1221.1.S1_at	11990232-113	-	-	1e+0	At1g07140	SIRANBP	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.8851.1.A1_at	CK370727	hypothetical protein LOC100273078	-	3e-6	At4g22330	ATCES1	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.6227.1.S1_at	AF272759.1	kinesin-like protein15	-	3e-23	At3g51150	kinesin motor family protein	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.2592.1.S1_at	BM351079	hypothetical protein LOC100191248	-	1e-5	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g25120	822103	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.20280.1.S1_at	BI749473	-	-	7e-1	At1g23360	UbiE/COQ5 methyltransferase family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	rbags24p23_at	rbags24p23	-	-	3e-1	At1g77770	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.4349.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.7156.1.A1_at	CK097724	-	-	6e-6	At4g10310	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.35343.1.S1_at	BQ609232	-	-	3e+0	At4g32020	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1622208_x_at	CF203749.1	-	-	7e-1	At2g26150	ATHSFA2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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