Gene omics information

Query gene ID	Zm.2652.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.75	90.8	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.2648.1.A1_at	AY104745.1	hypothetical protein LOC100216957	-	3e-3	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	S.X.	H.G.	Please select
0.71	88.2	Zm.265.1.A1_at	U38791.1	hypothetical protein LOC100279974	-	5e+0	At5g62040	brother of FT and TFL1 protein (BFT)	S.X.	H.G.	Please select
0.67	85.8	Zm.3436.1.A1_at	AI964659	hypothetical protein LOC100217002	-	1e-20	At3g54190	-	S.X.	H.G.	Please select
0.63	81.1	Zm.9097.1.A1_at	BM266610	-	-	1e+0	At2g17640	ATSERAT3	S.X.	H.G.	Please select
0.44	55.7	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.6	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	Zm.8244.1.S1_at	BM073405	-	-	2e+0	At1g30972	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5392.1.A1_a_at	CF003141	hypothetical protein LOC100193359 /// vacuolar ATP synthase subunit G	-	2e+0	At4g25950	VATG3 (vacuolar ATP synthase G3)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5392.1.A1_at	CF003141	vacuolar ATP synthase subunit G	-	2e+0	At4g25950	VATG3 (vacuolar ATP synthase G3)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.9023.1.A1_at	AY109177.1	-	-	4e-14	At4g02480	AAA-type ATPase family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5316.1.A1_at	AY107908.1	-	-	2e-3	At2g46225	ABIL1 (Abi-1-like 1)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4584.1.A1_at	BG266285	-	-	7e-19	At1g13180	DIS1 (DISTORTED TRICHOMES 1)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.303.1.S1_at	AF236373.1	hypersensitive induced reaction1	-	1e-42	At5g62740	band 7 family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.13195.1.S1_at	AI973328	-	-	7e-1	At2g18590	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select
0.01	2e+1	28	ZmAffx.1454.1.S1_at	11990232-21	-	-	0	Atcg00340	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At5g18020	831669	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.9005.1.S1_at	CB379496	-	-	3e-1	At5g19630	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Hordeum vulgare	Contig10788_at	Contig10788	-	-	6e-6	At5g24760	alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os08g0120000	AB017427.1	-	Succinate dehydrogenase iron-protein subunit(SDHB)	7e-1	At2g34520	RPS14 (mitochondrial ribosomal protein S14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Populus trichocarpa	PtpAffx.144183.1.S1_s_at	CK105701	hypothetical protein	-	2e+0	At2g36900	MEMB11 (MEMBRIN 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.129409.2.S1_at	CA635165	-	-	4e+0	At2g24440	selenium binding	C.G.	S.X.	Please select
0.05	2e-1	34	Vitis vinifera	1607852_at	CF373254	hypothetical protein LOC100249289 /// hypothetical protein LOC100264338 /// hypothetical protein LOC100265861	-	4e+0	At5g64650	ribosomal protein L17 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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