Gene omics information

Query gene ID	Zm.2648.1.A1_at
Gene name	hypothetical protein LOC100216957
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.2648.1.A1_at	AY104745.1	hypothetical protein LOC100216957	-	3e-3	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	S.X.	H.G.	Please select
0.77	92.1	Zm.265.1.A1_at	U38791.1	hypothetical protein LOC100279974	-	5e+0	At5g62040	brother of FT and TFL1 protein (BFT)	S.X.	H.G.	Please select
0.71	88.2	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.9097.1.A1_at	BM266610	-	-	1e+0	At2g17640	ATSERAT3	S.X.	H.G.	Please select
0.50	65.7	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.8	99.9	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
38.2	99.9	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
34.8	99.9	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
25.9	99.6	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
24.1	99.6	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
23.2	99.5	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
22.6	99.5	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
21.0	99.4	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
17.6	99.1	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.1	90.8	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-6	54	Zm.3938.1.A1_at	CB350990	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	C.G.	S.X.	Please select
0.02	3e-4	46	Zm.8309.1.S1_at	CF626652	quinone oxidoreductase	-	3e-6	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please select
0.04	3e-4	46	Zm.12309.1.S1_at	CA403435	ABA-induced protein	-	5e-1	At5g29560	calcium ion binding	C.G.	S.X.	Please select
0.03	5e-3	42	Zm.11997.1.A1_at	BM382529	-	-	4e+0	At5g67010	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.14695.1.S1_at	CB334472	hypothetical protein LOC100217075	-	3e+0	At1g09390	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.8877.1.A1_at	BM079605	hypothetical protein LOC100274262	-	2e-1	At5g11640	-	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3303.1.A1_x_at	AF271894.1	lipoxygenase	-	6e-6	At3g22400	LOX5	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3303.1.A1_at	AF271894.1	lipoxygenase	-	6e-6	At3g22400	LOX5	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.13688.1.S1_at	AY106837.1	MTN3	-	2e+0	At3g55070	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-3	44	Arabidopsis thaliana	At4g26740	828781	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-2	40	Glycine max	GmaAffx.63137.1.S1_at	BG043541	-	-	2e-6	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	C.G.	S.X.	Please select
0.46	4e-158	557	Hordeum vulgare	Contig4461_at	Contig4461	caleosin 1	-	9e+0	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	C.G.	S.X.	Please select
0.41	7e-89	329	Oryza sativa	Os04g0510900	AK063625.1	-	Embryo-specific protein 1 (ATS1)	9e+0	At1g23240	caleosin-related family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-2	40	Populus trichocarpa	Ptp.6973.1.S1_s_at	CV257729	hypothetical protein	-	1e-4	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	6e-137	488	Triticum aestivum	Ta.2720.1.S1_at	BJ297815	-	-	2e+0	At4g39720	VQ motif-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1620307_at	CB348708	hypothetical protein LOC100264814	-	2e-10	At2g33380	RD20 (RESPONSIVE TO DESSICATION 20)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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