Gene omics information

Query gene ID	Zm.2635.1.A1_at
Gene name	hypothetical protein LOC100216945
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	95.9	Zm.2635.1.A1_at	CF244162	hypothetical protein LOC100216945	-	7e-9	At5g63040	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.1942.1.A1_at	CF014864	-	-	7e-57	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	S.X.	H.G.	Please select
0.51	66.4	ZmAffx.720.1.S1_at	AI739909	-	-	2e-1	At1g11572	-	S.X.	H.G.	Please select
0.50	65.7	Zm.5181.1.A1_at	CF030446	CK2 protein kinase alpha 2	-	1e-82	At2g23080	casein kinase II alpha chain, putative	S.X.	H.G.	Please select
0.49	61.9	Zm.15685.2.S1_at	BG841369	-	-	5e+0	At5g52200	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.17748.1.S1_s_at	CK371075	protein kinase-like	-	2e+0	At1g80865	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.15523.1.A1_at	CD437396	threonine synthase	-	6e-5	At1g72810	threonine synthase, putative	S.X.	H.G.	Please select
0.38	44.2	Zm.6045.4.S1_at	AY105966.1	hypothetical protein LOC100191419	-	5e-4	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select
0.37	42.3	Zm.9535.1.A1_x_at	BM075999	-	-	5e+0	At5g56470	FAD-dependent oxidoreductase family protein	S.X.	H.G.	Please select
0.37	42.3	Zm.538.1.S1_at	AF256229.1	calcium exchanger1	-	1e-6	At3g51860	CAX3 (CATION EXCHANGER 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.1	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.3	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Zm.4117.1.A1_at	AW120283	-	-	4e-1	At1g78590	NADK3 (NAD(H) KINASE 3)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4913.1.A1_at	CD441543	hypothetical protein LOC100280306	-	3e-25	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.19135.1.A1_at	CO526574	-	-	2e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.19067.1.S1_at	AY107493.1	hypothetical protein LOC100279588	-	3e+0	At5g20810	auxin-responsive protein, putative / small auxin up RNA (SAUR_B)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.17652.1.S1_s_at	CK347269	plant-specific domain TIGR01615 family protein	-	3e+0	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13032.1.A1_at	AY107007.1	-	-	2e+0	At1g68907	-	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.1279.1.S1_at	AY104576.1	Rho-related protein from plants 7	-	3e-5	At3g48040	ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.1085.1.A1_a_at	BM339391	PRm 3	-	3e+0	At5g41960	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.10431.1.S1_at	BQ485377	-	-	1e+1	At5g01300	phosphatidylethanolamine-binding family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-9	61	Arabidopsis thaliana	At5g63040	836424	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.79733.1.S1_s_at	AI748104	Kunitz trypsin inhibitor /// trypsin inhibitor subtype A /// trypsin inhibitor subtype B	-	1e+1	At5g58070	TIL (TEMPERATURE-INDUCED LIPOCALIN)	C.G.	S.X.	Please select
0.45	2e-93	341	Hordeum vulgare	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	C.G.	S.X.	Please select
0.50	2e-164	579	Oryza sativa	Os01g0704200	9629.m04922	-	Conserved hypothetical protein	9e-12	At5g63040	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	4e-8	59	Populus trichocarpa	PtpAffx.54430.1.S1_at	DN502885	hypothetical protein	-	7e-24	At5g63040	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	32	Triticum aestivum	TaAffx.8043.1.S1_at	CA638319	-	-	2e+0	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1611963_at	CF514919	hypothetical protein LOC100267585	-	2e-39	At3g20640	ethylene-responsive protein -related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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