Gene omics information

Query gene ID	Zm.2602.1.S1_at
Gene name	hypothetical protein LOC100217277
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.2602.1.S1_at	AY109922.1	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	S.X.	H.G.	Please select
0.77	92.1	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select
0.61	79.5	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	S.X.	H.G.	Please select
0.47	59.9	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	S.X.	H.G.	Please select
0.38	44.2	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	0	1235	Zm.2602.1.A1_at	AY109922.1	Hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.17231.1.S1_at	CK369582	-	-	5e+0	At4g27120	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.12304.1.A1_at	CF637007	hypothetical protein LOC100274389	-	2e+0	At1g64720	CP5	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9810.1.A1_at	BM332775	-	-	6e-2	At4g05340	ATP binding	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9761.1.A1_at	CF626018	hypothetical protein LOC100277366	-	7e+0	At4g25050	ACP4 (acyl carrier protein 4)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9810.1.A1_a_at	BM332775	hypothetical protein LOC100274769	-	6e-2	At4g05340	ATP binding	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6767.1.S1_at	AY104126.1	hypothetical protein LOC100216595	-	3e-28	At1g52930	brix domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.676.1.S1_a_at	AF288075.1	diphosphonucleotide phosphatase1	-	8e-4	At5g63980	SAL1	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.5755.1.A1_at	AI834089	-	-	2e-4	At1g30820	CTP synthase, putative / UTP--ammonia ligase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-2	42	Arabidopsis thaliana	At5g24340	832504	3'-5' exonuclease domain-containing protein	F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-6	56	Glycine max	Gma.8145.2.A1_at	BG507989	-	-	4e-31	At5g24340	3'-5' exonuclease domain-containing protein	C.G.	S.X.	Please select
0.22	2e-30	133	Hordeum vulgare	Contig10265_at	Contig10265	-	-	2e-7	At5g24340	3'-5' exonuclease domain-containing protein	C.G.	S.X.	Please select
0.33	5e-50	200	Oryza sativa	Os07g0452400	CA762394	-	3'-5' exonuclease domain containing protein	3e-10	At5g24340	3'-5' exonuclease domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-6	56	Populus trichocarpa	PtpAffx.212560.1.S1_at	pmrna24614	hypothetical protein	-	1e-27	At5g24340	3'-5' exonuclease domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-45	184	Triticum aestivum	Ta.4164.1.S1_at	BT009452.1	-	-	4e-6	At5g24340	3'-5' exonuclease domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1622733_at	BQ793487	-	-	2e+0	At5g58060	YKT61	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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