Gene omics information

Query gene ID	Zm.2601.1.S1_at
Gene name	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2601.1.S1_at	U45856.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase	-	3e-139	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.18743.1.A1_at	CK985678	palmitoyltransferase ZDHHC9	-	6e-17	At5g50020	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.57	75.1	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.55	71.6	Zm.14040.1.A1_at	CF051487	C-4 methylsterol oxidase	-	6e-20	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	S.X.	H.G.	Please select
0.55	71.6	Zm.3144.1.S1_at	CD441537	nucleic acid binding protein	-	3e+0	At4g20420	tapetum-specific protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	95.9	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.6	95.2	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.4	94.9	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.3	94.7	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.2	94.5	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.2	94.5	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.2	94.5	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	1673	Zm.274.1.A1_at	U45857.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC4	-	7e-135	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.29	5e-145	513	Zm.16502.1.S1_at	U45855.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC2	-	9e-95	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.52	1e-142	506	Zm.3765.1.S1_s_at	CD446889	GADPH (AA 1-337)	-	1e-113	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.14	4e-65	248	Zm.16502.2.S1_at	CK371129	60S ribosomal protein L36-2	-	2e-21	At2g37600	60S ribosomal protein L36 (RPL36A)	C.G.	S.X.	Please select
0.10	3e-57	222	Zm.8466.1.S1_at	BQ538688	macrophage migration inhibitory factor	-	4e-11	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.11	4e-47	188	Zm.274.3.S1_at	CD961144	Cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3	-	2e+0	At4g16710	glycosyltransferase family protein 28	C.G.	S.X.	Please select
0.11	4e-47	188	Zm.274.3.S1_x_at	CD961144	Cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3	-	2e+0	At4g16710	glycosyltransferase family protein 28	C.G.	S.X.	Please select
0.12	4e-25	115	Zm.3765.2.S1_at	CA404497	GADPH (AA 1-337)	-	2e-9	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.19	6e-9	61	Zm.8992.2.A1_a_at	AW066740	hypothetical protein LOC100191900 /// glyceraldehyde-3-phosphate dehydrogenase, cytosolic	-	2e-25	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	3e-139	496	Arabidopsis thaliana	At3g04120	819567	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.44	1e-145	517	Glycine max	Gma.5505.1.S1_at	BI942102	-	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.56	8e-172	603	Hordeum vulgare	Contig149_at	Contig149	glyceraldehyde 3-phosphate dehydrogenase	-	3e-148	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.61	0	1035	Oryza sativa	Os04g0486600	BI797548	-	Glyceraldehyde-3-phosphate dehydrogenase,cytosolic 3 (EC 1.2.1.12)	2e+0	At1g09220	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.53	1e-117	424	Populus trichocarpa	PtpAffx.201011.1.S1_at	pmrna1985	hypothetical protein	-	1e-171	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	0	920	Triticum aestivum	Ta.24991.1.S1_x_at	CK214927	cytosolic glyceraldehyde-3-phosphate dehydrogenase GAPDH	-	4e-120	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.45	6e-119	426	Vitis vinifera	1615814_at	CB920915	hypothetical protein LOC100264789	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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