Gene omics information

Query gene ID	Zm.2569.1.A1_at
Gene name	agmatine coumaroyltransferase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2569.1.A1_at	CF635472	agmatine coumaroyltransferase	-	7e+0	At4g27900	-	S.X.	H.G.	Please select
0.91	99.0	Zm.2568.1.A1_a_at	BM079095	hypothetical protein LOC100276990	-	6e+0	At3g17070	peroxidase, putative	S.X.	H.G.	Please select
0.83	95.6	Zm.134.1.S1_at	U31521.1	Zea AGAMOUS homolog2	-	5e-11	At2g42830	SHP2 (SHATTERPROOF 2)	S.X.	H.G.	Please select
0.83	95.6	Zm.2565.1.A1_at	AY112147.1	-	-	2e+0	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please select
0.83	95.6	Zm.13400.1.A1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	S.X.	H.G.	Please select
0.77	92.1	Zm.10879.1.S1_at	AY109037.1	peroxidase 24	-	5e-2	At5g58400	peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.4	99.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
21.0	99.4	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
17.1	99.1	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
16.0	99.0	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
13.3	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-42	173	Zm.14541.1.S1_a_at	AY107924.1	agmatine coumaroyltransferase	-	2e+1	At5g18403	-	C.G.	S.X.	Please select
0.02	5e-5	48	Zm.9857.1.A1_at	CA404512	SLT1 protein	-	5e-21	At3g12570	FYD	C.G.	S.X.	Please select
0.03	8e-4	44	Zm.10833.1.A1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	C.G.	S.X.	Please select
0.03	8e-4	44	Zm.10833.1.S1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.6688.1.A1_at	BQ538665	hypothetical protein LOC100275476	-	3e+0	At1g68862	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.9630.1.A1_a_at	CN071471	hypothetical protein LOC100217192	-	2e-1	At1g04830	RabGAP/TBC domain-containing protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.402.1.S1_a_at	AF072326.1	endo-1,3-1,4-beta-D-glucanase	-	8e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.17696.1.A1_at	BM073027	-	-	2e-3	At4g31470	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8882.1.S1_at	BG320046	-	-	1e+1	At1g36732	CPuORF19 (Conserved peptide upstream open reading frame 19)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At4g27900	828903	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	PsAffx.psMY009iE02r_at	PsAffx.psMY009iE02r	-	-	1e+0	At1g08180	unknown protein	C.G.	S.X.	Please select
0.12	9e-10	63	Hordeum vulgare	Contig5587_at	Contig5587	-	-	8e-1	At2g30130	ASL5	C.G.	S.X.	Please select
0.28	8e-29	129	Oryza sativa	Os07g0244600	9635.m01398	-	Hypothetical protein	2e-3	At2g04190	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-4	46	Populus trichocarpa	PtpAffx.220497.1.S1_at	pmrna36890	hypothetical protein	-	4e-1	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	4e-32	139	Triticum aestivum	TaAffx.25358.1.S1_at	CA720263	-	-	1e+0	At5g15480	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1618543_at	BQ792450	hypothetical protein LOC100263765	-	3e-8	At5g01710	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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