Gene omics information

Query gene ID	Zm.2568.1.A1_a_at
Gene name	hypothetical protein LOC100276990
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2568.1.A1_a_at	BM079095	hypothetical protein LOC100276990	-	6e+0	At3g17070	peroxidase, putative	S.X.	H.G.	Please select
0.91	99.0	Zm.2569.1.A1_at	CF635472	agmatine coumaroyltransferase	-	7e+0	At4g27900	-	S.X.	H.G.	Please select
0.83	95.6	Zm.134.1.S1_at	U31521.1	Zea AGAMOUS homolog2	-	5e-11	At2g42830	SHP2 (SHATTERPROOF 2)	S.X.	H.G.	Please select
0.83	95.6	Zm.2565.1.A1_at	AY112147.1	-	-	2e+0	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please select
0.83	95.6	Zm.13400.1.A1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	S.X.	H.G.	Please select
0.77	92.1	Zm.10879.1.S1_at	AY109037.1	peroxidase 24	-	5e-2	At5g58400	peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	98.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
12.7	98.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
12.0	98.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.1	98.0	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	ZmAffx.456.1.A1_at	AI677202	-	-	2e-1	At1g75770	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.1703.1.S1_at	CO522762	M27 protein	-	6e-9	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.1153.1.A1_at	AW424670	hypothetical protein LOC100274541	-	1e+1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.1153.1.S1_at	AW424670	-	-	1e+1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.9717.1.A1_at	BM336547	hypothetical protein LOC100192773	-	9e-5	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8783.1.A1_at	BM332025	6b-interacting protein 1	-	1e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.7081.2.S1_a_at	CF017560	hypothetical protein LOC100193634 /// 60S ribosomal protein L24 /// 60S ribosomal protein L24 /// ribosomal protein L32 homolog32	-	3e-45	At3g53020	STV1 (SHORT VALVE1)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.7081.1.S1_x_at	BM078729	hypothetical protein LOC100193634 /// ribosomal protein L32 homolog32	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.7081.1.S1_at	BM078729	Hypothetical protein LOC100193634	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At3g17070	820964	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.65523.1.S1_at	CA782549	-	-	3e-3	At5g56090	COX15 (cytochrome c oxidase 15)	C.G.	S.X.	Please select
0.06	2e-10	65	Hordeum vulgare	Contig4901_at	Contig4901	-	-	5e+0	At5g01380	transcription factor	C.G.	S.X.	Please select
0.02	8e-1	36	Oryza sativa	Os02g0720100	AK063724.1	-	Plastocyanin-like domain containing protein	8e+0	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.6632.1.S1_at	CK109432	cytochrome P450	-	2e-36	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	7e-9	61	Triticum aestivum	Ta.3553.2.S1_x_at	CA652299	-	-	4e-1	At3g48880	F-box family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1619382_at	CA817878	hypothetical protein LOC100251065	-	2e-27	At1g48240	ATNPSN12	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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