Gene omics information

Query gene ID	Zm.2548.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.2548.1.A1_at	AY106256.1	-	-	2e-26	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.17189.1.A1_at	BM268883	-	-	5e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.7750.4.S1_at	AW499152	-	-	3e-28	At1g75780	TUB1	S.X.	H.G.	Please select
0.33	36.0	Zm.15489.1.A1_at	CD219260	hypothetical protein LOC100191928 /// hypothetical protein LOC100192092	-	2e-5	At3g18170	transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.31	31.6	Zm.14898.1.A1_x_at	BM351319	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	S.X.	H.G.	Please select
0.15	8.6	Zm.2581.1.A1_at	BM078550	-	-	4e-1	At4g15460	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	94.7	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.9	93.8	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.8	93.5	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	36	Zm.947.1.A1_at	BF733123	-	-	2e-2	At3g17180	scpl33 (serine carboxypeptidase-like 33)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.6709.1.A1_at	AI391870	hypothetical protein LOC100280423	-	4e-1	At1g77100	peroxidase, putative	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.3088.1.S1_at	AW155774	serine carboxypeptidase 1	-	4e+0	At5g52750	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.1385.1.A1_at	CF628524	hypothetical protein LOC100273765	-	6e-6	At5g17610	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.12165.1.A1_at	BI595866	ABC-type Co2+ transport system, permease component	-	4e-1	At1g15900	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	32	ZmAffx.994.1.A1_at	AI855283	-	-	3e+0	At5g11360	-	C.G.	S.X.	Please select
0.02	6e+0	32	ZmAffx.994.1.S1_at	AI855283	sphingosine-1-phosphate lyase	-	3e+0	At5g11360	-	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.9991.1.S1_at	BQ619114	hypothetical protein LOC100191513	-	7e-17	At5g09300	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.9729.1.A1_at	BM337738	-	-	7e-3	At5g03330	OTU-like cysteine protease family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-26	121	Arabidopsis thaliana	At4g02570	825648	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	3e-29	131	Glycine max	GmaAffx.90456.1.S1_s_at	CF806181	-	-	3e-60	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select
0.57	0	650	Hordeum vulgare	Contig3124_at	Contig3124	-	-	8e-32	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select
0.50	0	1063	Oryza sativa	Os05g0149600	AK073947.1	-	Cullin 1	8e-30	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	8e-33	143	Populus trichocarpa	Ptp.2481.1.A1_s_at	CV247386	hypothetical protein	-	2e-28	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	0	928	Triticum aestivum	Ta.934.1.S1_at	CK209813	-	-	7e-15	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select
0.15	2e-39	163	Vitis vinifera	1610315_at	BQ792398	hypothetical protein LOC100261361	-	9e-21	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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