Gene omics information

Query gene ID	Zm.250.1.S1_at
Gene name	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.250.1.S1_at	CF007330	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097	-	5e+0	At3g06000	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.60	77.8	Zm.4323.1.S1_at	AY110219.1	-	-	2e+0	At1g49150	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.8514.1.S1_at	AY104758.1	-	-	5e+0	At5g35525	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.8	100.0	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
47.2	100.0	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
29.9	99.8	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
29.4	99.8	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
9.7	98.3	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.4	97.8	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.8	97.6	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.3	97.4	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.1	97.4	GSM205368	B73xMo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.1	96.8	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-3	40	Zm.321.1.S1_at	CF006447	basal layer antifungal peptide	-	3e-1	At5g57370	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.322.1.S1_at	AJ297903.1	basal layer antifungal peptide	-	5e+0	At5g06230	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.16378.1.S1_at	CK787098	hypothetical protein LOC100216656	-	4e-4	At3g49100	signal recognition particle 9 kDa protein, putative / SRP9, putative	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.261.1.A1_at	AI670366	hypothetical protein LOC100277543	-	8e-1	At1g03440	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.261.1.S1_at	AI670366	-	-	8e-1	At1g03440	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6178.1.A1_at	AY110570.1	auxin Efflux Carrier family protein	-	1e+0	At4g34960	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13171.1.A1_at	AW061975	seed maturation protein	-	4e-5	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.1131.1.A1_at	AY108222.1	-	-	6e-1	At3g26235	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.1131.1.S1_at	AY108222.1	-	-	6e-1	At3g26235	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g06000	819771	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.44141.1.S1_at	AW756248	-	-	1e-15	At2g21410	VHA-A2 (VACUOLAR PROTON ATPASE A2)	C.G.	S.X.	Please select
0.03	1e-1	36	Hordeum vulgare	HVSMEn0019D12r2_s_at	HVSMEn0019D12r2	-	-	4e+0	At5g66815	unknown protein	C.G.	S.X.	Please select
0.04	1e+1	32	Oryza sativa	Os05g0352200	9634.m04936	-	-	1e+1	At5g52960	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.139172.2.S1_s_at	CV252129	hypothetical protein	-	2e-5	At3g59690	IQD13 (IQ-domain 13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	Ta.22223.1.S1_at	CA730862	-	-	2e+0	At4g01535	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1618756_at	CB977044	hypothetical protein LOC100260418	-	3e-3	At5g61150	VIP4 (VERNALIZATION INDEPENDENCE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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