Gene omics information

Query gene ID	Zm.2427.1.S1_at
Gene name	hypothetical protein LOC100217316
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2427.1.S1_at	AY108148.1	hypothetical protein LOC100217316	-	1e-3	At2g43970	La domain-containing protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.806.1.A1_at	AI770388	Hypothetical protein LOC100191755	-	8e-1	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.18993.1.S1_at	CO528827	-	-	3e-3	At2g10950	BSD domain-containing protein	S.X.	H.G.	Please select
0.26	22.7	Zm.17494.1.A1_at	CK145115	hypothetical protein LOC100193709	-	3e-20	At1g68010	HPR	S.X.	H.G.	Please select
0.23	18.6	Zm.1483.1.S1_at	BE050487	-	-	1e+0	At5g13470	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.1559.1.S1_at	BF729152	IDP53 protein	-	4e+0	At2g23570	MES19 (METHYL ESTERASE 19)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	1e-38	161	Zm.3171.1.A1_at	AY104553.1	RNA binding protein	-	4e-12	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.01	7e-3	42	Zm.1513.1.S1_at	L46400.1	MADS box protein	-	9e-13	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.18422.1.S1_at	CO521857	nuclear transcription factor Y subunit C-2	-	2e-13	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.651.1.S1_at	AY029558.1	methyl binding domain	-	4e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.1729.1.A1_at	CF055997	hypothetical protein LOC100193099	-	6e-1	At4g29030	glycine-rich protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.17111.1.A1_at	CF972394	-	-	3e+0	At5g48530	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	ZmAffx.853.1.A1_at	AI770653	-	-	2e-1	At3g06130	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	4e-1	36	ZmAffx.853.1.S1_at	AI770653	heavy metal-associated domain containing protein	-	2e-1	At3g06130	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.9282.1.A1_at	BM268851	WRKY74 - superfamily of TFs having WRKY and zinc finger domains	-	5e+0	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-3	46	Arabidopsis thaliana	At2g43970	819002	La domain-containing protein	F:RNA binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus, chloroplast;OMFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-8	61	Glycine max	Gma.9020.2.S1_at	AI736080	-	-	1e-14	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.34	4e-162	571	Hordeum vulgare	Contig4681_at	Contig4681	-	-	4e-6	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.38	6e-161	569	Oryza sativa	Os11g0248200	AK107293.1	-	RNA-binding protein Lupus La domain containingprotein	6e-8	At2g43970	La domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-24	115	Populus trichocarpa	PtpAffx.4395.3.A1_a_at	CV239791	hypothetical protein	-	2e-28	At2g43970	La domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	1e-77	291	Triticum aestivum	Ta.28757.1.S1_at	AJ612432	-	-	3e-10	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.05	7e-5	48	Vitis vinifera	1620118_at	CB004260	-	-	9e-8	At2g43970	La domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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