Gene omics information

Query gene ID	Zm.24.2.S1_at
Gene name	viviparous1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.24.2.S1_at	AJ001635.1	viviparous1	-	3e+0	At2g40765	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	S.X.	H.G.	Please select
0.61	79.5	Zm.1047.1.S1_at	CB381142	hypothetical protein LOC100277178	-	1e+0	At1g10865	-	S.X.	H.G.	Please select
0.60	77.8	Zm.17589.1.A1_at	CK144401	protein binding protein	-	3e-2	At1g77830	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.4618.1.A1_at	AW066311	pre-mRNA-splicing factor ISY1	-	4e-7	At3g18790	-	S.X.	H.G.	Please select
0.53	69.1	Zm.14052.1.A1_at	CF036019	hypothetical protein LOC100272508	-	3e-17	At2g22400	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.9	99.0	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.9	98.3	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.6	98.3	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.0	98.2	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.9	98.2	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.9	98.2	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.7	97.9	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	3043	Zm.24.2.S1_a_at	AJ001635.1	viviparous1	-	3e+0	At2g40765	unknown protein	C.G.	S.X.	Please select
1.00	0	3043	Zm.24.2.A1_at	AJ001635.1	viviparous1	-	3e+0	At2g40765	unknown protein	C.G.	S.X.	Please select
0.63	0	2579	Zm.24.1.S1_at	M60214.1	viviparous1	-	3e-17	At3g24650	ABI3 (ABA INSENSITIVE 3)	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.1917.1.S1_at	AW506675	-	-	6e-4	At1g27690	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.13245.1.S1_at	AF450481.1	CBF3-like protein	-	2e+0	At3g22800	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.10313.1.S1_at	AY082396.1	knotted1-interacting protein	-	2e-7	At2g16400	BLH7 (bell1-like homeodomain 7)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.9649.1.A1_at	BM337167	hypothetical protein LOC100277264	-	1e+0	At1g43720	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.8561.1.A1_at	BM336075	-	-	1e-3	At1g02070	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At2g40765	818673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial respiratory chain complex III;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e+0	36	Glycine max	PsAffx.CL241Contig1_at	PsAffx.CL241Contig1	-	-	6e-1	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	C.G.	S.X.	Please select
0.06	6e-34	145	Hordeum vulgare	Contig10484_at	Contig10484	-	-	6e-10	At3g24650	ABI3 (ABA INSENSITIVE 3)	C.G.	S.X.	Please select
0.33	1e-71	272	Oryza sativa	Os01g0911700	AK073805.1	-	Transcription activator VP1-rice	9e-8	At3g24650	ABI3 (ABA INSENSITIVE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.218566.1.S1_at	pmrna34228	hypothetical protein	-	5e+0	At1g01690	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	3e-65	250	Triticum aestivum	Ta.42.1.S1_at	AB047554.1	-	-	5e-6	At3g24650	ABI3 (ABA INSENSITIVE 3)	C.G.	S.X.	Please select
0.01	4e+0	32	Vitis vinifera	1616308_at	CF207045.1	-	-	7e-2	At1g56200	emb1303 (embryo defective 1303)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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