Gene omics information

Query gene ID Zm.24.1.S1_at
Gene name viviparous1
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5674.4Zm.24.1.S1_atM60214.1viviparous1-3e-17At3g24650ABI3 (ABA INSENSITIVE 3)S.X.H.G.
0.6077.8Zm.4627.2.A1_atBM333588transcription factor BTF3-6e-10At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeS.X.H.G.
0.4658.4Zm.6138.1.A1_atCF062392--1e-1At5g04910unknown proteinS.X.H.G.
0.4048.5Zm.378.1.S1_atCO532007seven in absentia homolog-3e-25At3g61790seven in absentia (SINA) family proteinS.X.H.G.
0.2115.5Zm.3762.1.A1_atAY108773.1beta-amylase-6e+0At1g26916unknown proteinS.X.H.G.
0.2014.2Zm.11978.1.A1_atCF628615nucleolar protein 10-5e-1At5g51590DNA-binding protein-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.199.2GSM202310B73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
17.999.2GSM202324Mo17xB73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
16.799.1GSM202311Mo17xB73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
16.199.0GSM202318B73xMo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
15.398.9GSM202313B73xMo17 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
15.098.9GSM202309Mo17 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
13.798.8GSM202322B73x Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
13.598.8GSM202314Mo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
13.598.8GSM202320B73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
13.298.8GSM202319Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.6302579Zm.24.2.S1_a_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinC.G.S.X.
0.6302579Zm.24.2.A1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinC.G.S.X.
0.6302579Zm.24.2.S1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinC.G.S.X.
0.011e-138Zm.6915.1.S1_atAW256266hypothetical protein LOC100280116-5e-1At5g64160unknown proteinC.G.S.X.
0.011e-138Zm.1917.1.S1_atAW506675--6e-4At1g27690unknown proteinC.G.S.X.
0.011e-138Zm.13245.1.S1_atAF450481.1CBF3-like protein-2e+0At3g22800leucine-rich repeat family protein / extensin family proteinC.G.S.X.
0.011e-138Zm.10313.1.S1_atAY082396.1knotted1-interacting protein-2e-7At2g16400BLH7 (bell1-like homeodomain 7)C.G.S.X.
0.016e-136Zm.9649.1.A1_atBM337167hypothetical protein LOC100277264-1e+0At1g43720unknown proteinC.G.S.X.
0.016e-136Zm.8561.1.A1_atBM336075--1e-3At1g02070unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-1791Arabidopsis thalianaAt3g24650822061ABI3 (ABA INSENSITIVE 3)Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.---C.G.S.X.
0.012e+036Glycine maxPsAffx.CL241Contig1_atPsAffx.CL241Contig1--6e-1At2g46820PSI-P (PHOTOSYSTEM I P SUBUNIT)C.G.S.X.
0.184e-110398Hordeum vulgareContig10484_atContig10484--6e-10At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.432e-106389Oryza sativaOs01g0911700AK073805.1-Transcription activator VP1-rice9e-8At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.062e-1275Populus trichocarpaPtpAffx.144743.1.S1_atAJ003166.1hypothetical protein-1e-68At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.355e-102373Triticum aestivumTa.42.1.S1_atAB047554.1--5e-6At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.014e-136Vitis vinifera1616874_atCF415286--2e-18At5g58250unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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