Gene omics information

Query gene ID	Zm.2383.1.A1_at
Gene name	hypothetical protein LOC100275670
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.2383.1.A1_at	BG842498	hypothetical protein LOC100275670	-	5e+0	At2g13820	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.80	94.0	Zm.9584.1.A1_at	BM339549	hypothetical protein LOC100276344	-	9e-2	At5g63150	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.9585.1.A1_at	BM340807	-	-	4e-1	At3g22930	calmodulin, putative	S.X.	H.G.	Please select
0.57	75.1	Zm.818.1.A1_at	CK985714	hypothetical protein LOC100194015	-	1e-1	At5g14690	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.9586.1.A1_at	BM333269	hypothetical protein LOC100276026	-	7e-1	At2g42130	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.9001.1.A1_x_at	CO534924	heavy metal-associated domain containing protein	-	5e+0	At5g05300	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.1	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-10	65	Zm.12874.1.A1_at	CD441343	-	-	3e-9	At2g20330	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.07	3e-8	57	Zm.8817.1.A1_at	BM075765	-	-	2e+0	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	C.G.	S.X.	Please select
0.03	3e-5	48	Zm.5870.1.S1_at	BF729179	hypothetical protein LOC100272552	-	1e+0	At3g26147	unknown protein	C.G.	S.X.	Please select
0.06	3e-5	48	Zm.12315.1.S1_at	BM380411	hypothetical protein LOC100273048	-	2e-7	At1g01360	unknown protein	C.G.	S.X.	Please select
0.05	2e-3	42	Zm.7685.3.A1_a_at	BM268156	-	-	4e+0	At4g27810	unknown protein	C.G.	S.X.	Please select
0.08	8e-3	40	Zm.8915.2.S1_a_at	CD526531	UDP-sugar pyrophospharylase	-	3e-1	Atmg00370	-	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.17573.1.A1_at	CF630261	regulatory subunit	-	8e+0	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	C.G.	S.X.	Please select
0.04	1e-1	36	Zm.15825.1.S1_at	CA403397	glucan endo-1,3-beta-glucosidase A6	-	2e-2	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select
0.04	1e-1	36	Zm.15825.1.S1_x_at	CA403397	glucan endo-1,3-beta-glucosidase A6	-	2e-2	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g13820	815865	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	GmaAffx.76.1.A1_at	AI856237	-	-	2e-1	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.05	9e-3	40	Hordeum vulgare	HVSMEg0015J20r2_at	HVSMEg0015J20r2	-	-	4e+0	At1g22720	wall-associated kinase, putative	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os09g0409000	AK107676.1	-	Hypothetical protein	3e-2	At4g31580	SRZ-22	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-2	40	Populus trichocarpa	PtpAffx.117511.1.S1_s_at	DN496179	hypothetical protein	-	9e-18	At1g18610	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	2e-92	339	Triticum aestivum	TaAffx.113222.1.S1_at	CA617147	-	-	2e+1	At5g08480	VQ motif-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1621654_at	CB979616	hypothetical protein LOC100256116	-	3e-4	At2g26830	emb1187 (embryo defective 1187)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage