Gene omics information

Query gene ID	Zm.2376.6.S1_x_at
Gene name	cortical cell-delineating protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.5479.1.A1_at	AY109635.1	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	S.X.	H.G.	Please select
0.67	85.8	Zm.6498.1.A1_at	AI691894	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	S.X.	H.G.	Please select
0.57	75.1	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.3135.1.S1_at	CD981826	catalytic/ protein phosphatase type 2C	-	2e-13	At1g47380	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please select
0.24	19.8	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.3	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
17.8	99.1	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
17.1	99.1	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
16.3	99.0	GSM206321	Lower pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
16.2	99.0	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
15.2	98.9	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.9	98.5	GSM206315	Upper pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.8	98.1	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.8	98.1	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.6	97.6	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	0	932	Zm.2376.1.A1_a_at	AF001634.1	physical impedance induced protein /// cortical cell-delineating protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.76	0	932	Zm.2376.1.A1_x_at	AF001634.1	physical impedance induced protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.58	0	739	Zm.2376.2.S1_x_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.58	0	739	Zm.2376.2.S1_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.46	1e-138	492	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.28	1e-104	379	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	C.G.	S.X.	Please select
0.12	3e-18	91	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select
0.17	3e-18	91	Zm.1835.2.A1_at	CK985959	cortical cell-delineating protein	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	C.G.	S.X.	Please select
0.18	9e-16	83	Zm.1835.1.A1_at	CK368819	cortical cell-delineating protein	-	2e+0	At2g25820	transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-3	42	Arabidopsis thaliana	At5g63740	836494	zinc finger protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.91420.1.S1_s_at	CF807145	-	-	4e-3	At4g13390	proline-rich extensin-like family protein	C.G.	S.X.	Please select
0.17	1e-18	93	Hordeum vulgare	EBro04_SQ001_J04_at	EBro04_SQ001_J04	-	-	3e+0	At4g12550	AIR1	C.G.	S.X.	Please select
0.18	3e-19	97	Oryza sativa	Os10g0552800	AK062381.1	-	RCc3 protein	9e-2	At2g25820	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-3	42	Populus trichocarpa	PtpAffx.224051.1.S1_x_at	pmrna42286	hypothetical protein	-	6e-1	At3g46900	COPT2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	2e-139	496	Triticum aestivum	Ta.28122.1.S1_at	CA624634	-	-	2e+1	At5g19257	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	42	Vitis vinifera	1610982_at	CF214253	aquaporin PIP2	-	6e-18	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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