Gene omics information

Query gene ID	Zm.2376.2.S1_x_at
Gene name	Physical impedance induced protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.2376.2.S1_x_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	S.X.	H.G.	Please select
0.67	85.8	Zm.12625.1.A1_at	BU051542	-	-	4e+0	At3g51642	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.484.1.A1_at	AF136827.1	elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.46	58.4	Zm.5276.1.A1_at	AY108798.1	brain protein 44-like	-	2e-5	At5g20090	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.14347.1.S1_at	AY106522.1	-	-	2e+0	At3g29590	AT5MAT	S.X.	H.G.	Please select
0.39	45.6	Zm.5757.1.A1_at	AI637260	laccase 1	-	5e-4	At5g01040	LAC8 (laccase 8)	S.X.	H.G.	Please select
0.37	42.3	Zm.1659.1.A1_at	BG316738	hypothetical protein LOC100194135	-	3e+0	At1g79010	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)	S.X.	H.G.	Please select
0.35	38.9	Zm.3773.1.A1_at	AY110209.1	Hypothetical protein LOC100193094	-	4e+0	At4g18620	-	S.X.	H.G.	Please select
0.35	38.9	Zm.3972.1.A1_at	AI734598	26S protease regulatory subunit S10B	-	2e-33	At5g43010	RPT4A	S.X.	H.G.	Please select
0.23	18.6	Zm.1989.1.S1_at	AW566298	hypothetical protein LOC100193882	-	3e-14	At2g41970	protein kinase, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.7	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.2	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.9	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1263	Zm.2376.2.S1_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.59	0	739	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.65	0	672	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.57	2e-170	597	Zm.2376.1.A1_a_at	AF001634.1	physical impedance induced protein /// cortical cell-delineating protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.57	2e-170	597	Zm.2376.1.A1_x_at	AF001634.1	physical impedance induced protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.17	2e-22	105	Zm.1835.2.A1_at	CK985959	cortical cell-delineating protein	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	C.G.	S.X.	Please select
0.17	5e-20	97	Zm.1835.1.A1_at	CK368819	cortical cell-delineating protein	-	2e+0	At2g25820	transcription factor	C.G.	S.X.	Please select
0.15	2e-19	95	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select
0.18	2e-13	75	Zm.5746.1.A1_at	CK986017	-	-	4e-1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At3g24510	822044	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	GmaAffx.60984.1.S1_at	BU765206	-	-	2e-2	At4g12500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.17	6e-20	97	Hordeum vulgare	EBro04_SQ001_J04_at	EBro04_SQ001_J04	-	-	3e+0	At4g12550	AIR1	C.G.	S.X.	Please select
0.18	6e-20	99	Oryza sativa	Os10g0552700	AK063090.1	-	Tumor-related protein (Fragment)	2e+1	At5g67600	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.213410.1.S1_s_at	pmrna26233	hypothetical protein	-	4e-1	At3g52480	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	7e-117	420	Triticum aestivum	Ta.28122.1.S1_at	CA624634	-	-	2e+1	At5g19257	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1622456_at	CF609276	hypothetical protein LOC100245907 /// hypothetical protein LOC100265993	-	2e-1	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage