Gene omics information

Query gene ID	Zm.2330.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2330.1.S1_at	BE552610	-	-	4e-15	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	S.X.	H.G.	Please select
0.77	92.1	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.810.1.S1_at	CF006379	-	-	6e-69	At5g45550	mob1/phocein family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.245.1.S1_at	AY108063.1	glutathione transferase6	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	S.X.	H.G.	Please select
0.50	65.7	Zm.3808.1.S1_at	CF010880	low-molecular-weight cysteine-rich protein LCR68	-	5e+0	At4g02850	phenazine biosynthesis PhzC/PhzF family protein	S.X.	H.G.	Please select
0.43	52.8	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.4	97.0	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-2	40	Zm.3410.1.A1_at	AB035645.1	ferredoxin	-	1e-42	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.3075.1.A1_at	CO520772	thymidylate kinase	-	2e+1	At3g61829	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.9865.1.A1_at	CK826989	hypothetical protein LOC100276776	-	6e+0	At4g04020	FIB (FIBRILLIN)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7361.1.A1_at	AY108454.1	hypothetical protein LOC100272701	-	6e-1	At5g54360	zinc finger (C2H2 type) family protein-related	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.681.1.A1_at	AY029313.1	barley mlo defense gene homolog2	-	4e-6	At2g17480	MLO8 (MILDEW RESISTANCE LOCUS O 8)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.6048.1.S1_at	BE640401	serine/threonine protein kinase	-	7e-17	At2g24360	serine/threonine/tyrosine kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.4373.1.S1_at	AY061964.1	fertilization independent endosperm1	-	2e-5	At3g20740	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.2603.2.A1_at	AY111467.1	-	-	3e-2	At5g02540	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.2603.2.S1_at	AY111467.1	-	-	3e-2	At5g02540	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-15	83	Arabidopsis thaliana	At2g42120	818812	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:nucleus;OMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	9e-11	69	Glycine max	GmaAffx.37096.1.S1_at	BI424646	-	-	1e-6	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	C.G.	S.X.	Please select
0.02	4e-1	36	Hordeum vulgare	Contig14270_s_at	Contig14270	-	-	3e-1	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	C.G.	S.X.	Please select
0.59	0	658	Oryza sativa	Os03g0128500	AB037900.1	-	DNA polymerase delta small subunit (EC 2.7.7.7)	1e-21	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	9e-11	69	Populus trichocarpa	PtpAffx.213297.1.S1_at	pmrna26000	hypothetical protein	-	4e-24	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	3e-44	180	Triticum aestivum	TaAffx.94763.1.S1_at	BF484852	-	-	2e-2	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1621404_at	CB916166	hypothetical protein LOC100263130	-	5e-28	At3g45870	integral membrane family protein / nodulin MtN21-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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