Gene omics information

Query gene ID	Zm.2329.1.S1_at
Gene name	hypothetical protein LOC100192702
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.6	Zm.2329.1.S1_at	AY106201.1	hypothetical protein LOC100192702	-	2e+0	At1g62840	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.3925.1.A1_at	CF045284	hypothetical protein LOC100273553	-	4e-8	At1g31930	XLG3 (extra-large GTP-binding protein 3)	S.X.	H.G.	Please select
0.16	9.4	Zm.6645.1.S1_at	CF637989	NADH ubiquinone oxidoreductase B22-like subunit	-	2e+0	At2g40810	AtATG18c	S.X.	H.G.	Please select
0.15	8.6	Zm.12970.1.A1_at	CO049279	hypothetical protein LOC100193219	-	7e-7	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	S.X.	H.G.	Please select
0.10	4.6	Zm.13556.1.A1_at	AY108151.1	-	-	9e-1	At5g66490	unknown protein	S.X.	H.G.	Please select
0.08	3.4	ZmAffx.1206.1.S1_s_at	BE130052	-	-	2e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.07	2.9	Zm.6303.1.S1_at	AF064707.1	-	-	8e-27	At5g20950	glycosyl hydrolase family 3 protein	S.X.	H.G.	Please select
0.06	2.3	Zm.960.1.S1_at	BU093044	hypothetical protein LOC100274333	-	1e-4	At2g22830	SQE2 (squalene epoxidase 2)	S.X.	H.G.	Please select
0.06	2.3	Zm.2915.1.A1_at	AW091226	-	-	1e+0	At3g55610	P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)	S.X.	H.G.	Please select
0.04	1.5	Zm.12377.1.S1_at	BQ577907	-	-	1e+1	At3g10915	reticulon family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.9	99.3	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
15.2	98.9	GSM202405	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep5	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
14.9	98.9	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
14.6	98.9	GSM253267	ZM_4d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
13.8	98.8	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM258200	W22 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
9.2	98.2	GSM202278	B73 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
9.1	98.2	GSM202286	B73 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
9.1	98.2	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	7e-29	127	Zm.3797.1.S1_at	BU097764	pollen allergen Phl p 11	-	8e+0	At5g48720	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	C.G.	S.X.	Please select
0.04	9e-7	54	Zm.1381.1.S1_at	S44171.1	male-gametophyte specific1	-	2e+0	At4g29350	PFN2 (PROFILIN 2)	C.G.	S.X.	Please select
0.04	8e-4	44	Zm.5401.1.S1_at	AI065471	pollen-specific protein C13	-	5e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2254.1.S1_at	AW330764	hypothetical protein LOC100275361	-	3e-1	At1g62840	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.15812.1.S1_at	CD445752	-	-	7e+0	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.15324.1.A1_at	CB350660	-	-	4e-3	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10432.1.A1_at	AY111714.1	Alkaline alpha galactosidase 1	-	2e+1	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10432.1.S1_at	AY111714.1	-	-	2e+1	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.2433.1.S1_at	AY103747.1	hypothetical protein LOC100191762	-	3e-14	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g62840	842584	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	Gma.15124.1.S1_at	BU548348	-	-	1e-41	At1g27310	NTF2A (NUCLEAR TRANSPORT FACTOR 2A)	C.G.	S.X.	Please select
0.04	1e-3	44	Hordeum vulgare	Contig4806_at	Contig4806	-	-	4e-1	At4g08685	SAH7	C.G.	S.X.	Please select
0.20	3e-31	137	Oryza sativa	Os06g0556600	AK072511.1	-	Pollen Ole e 1 allergen and extensin domaincontaining protein	8e+0	At5g44568	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.218850.1.S1_x_at	pmrna34590	hypothetical protein	-	4e-3	At1g29730	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	9e-9	61	Triticum aestivum	TaAffx.87016.1.S1_at	CA597228	-	-	8e-1	At4g21190	emb1417 (embryo defective 1417)	C.G.	S.X.	Please select
0.04	2e-3	42	Vitis vinifera	1622009_at	CB975640	hypothetical protein LOC100244652	-	2e-3	At4g08685	SAH7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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