Gene omics information

Query gene ID	Zm.2279.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.2279.1.S1_at	BF728020	-	-	2e-2	At3g54010	PAS1 (PASTICCINO 1)	S.X.	H.G.	Please select
0.47	59.9	Zm.19158.1.A1_at	AY103871.1	hypothetical protein LOC100273021	-	1e-4	At5g16400	ATF2	S.X.	H.G.	Please select
0.40	48.5	Zm.1241.1.A1_at	AY111716.1	fiber protein Fb34	-	6e+0	At4g24240	WRKY7	S.X.	H.G.	Please select
0.36	41.3	Zm.5551.1.A1_a_at	AY110434.1	-	-	6e-1	At1g63820	-	S.X.	H.G.	Please select
0.32	33.4	Zm.6023.1.S1_at	AY059648.1	alternative oxidase AOX3 precursor	-	1e-5	At1g32350	AOX1D (alternative oxidase 1D)	S.X.	H.G.	Please select
0.23	18.6	ZmAffx.474.1.S1_at	AI677507	-	-	8e+0	Atcg00440	-	S.X.	H.G.	Please select
0.14	7.7	Zm.2447.1.A1_at	BM079996	-	-	2e+0	At3g19140	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.11	5.3	Zm.19103.1.S1_at	CF625279	hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.3	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.3	96.1	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	9e-101	365	Zm.4216.1.A1_at	AW066666	peptidyl-prolyl isomerase PASTICCINO1	-	2e-9	At3g54010	PAS1 (PASTICCINO 1)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.7579.1.A1_at	CO520294	hypothetical protein LOC100276241	-	3e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.181.1.A1_at	AY243800.1	transmembrane protein	-	3e-12	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.17969.1.A1_at	CK827261	-	-	5e+0	At4g38360	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.781.1.S1_at	AY106923.1	hypothetical protein LOC100192065	-	2e-4	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.8926.2.S1_at	BM350553	Hypothetical protein LOC100192920	-	3e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.8926.1.S1_at	BE051229	hypothetical protein LOC100192920	-	4e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.8926.2.S1_x_at	BM350553	Hypothetical protein LOC100192920	-	3e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.731.1.A1_at	CA404803	-	-	1e-22	At4g26600	nucleolar protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-2	40	Arabidopsis thaliana	At3g54010	824568	PAS1 (PASTICCINO 1)	Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-11	69	Glycine max	GmaAffx.78290.1.S1_at	BM528728	-	-	8e-37	At3g54010	PAS1 (PASTICCINO 1)	C.G.	S.X.	Please select
0.13	1e-32	139	Hordeum vulgare	Contig10007_at	Contig10007	-	-	5e-12	At3g54010	PAS1 (PASTICCINO 1)	C.G.	S.X.	Please select
0.09	1e-17	91	Oryza sativa	Os03g0367000	AK065282.1	-	Pasticcino 1-A	7e-21	At3g54010	PAS1 (PASTICCINO 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.73710.1.S1_at	CX180923	white-brown-complex ABC transporter family	-	4e-22	At2g01320	ABC transporter family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	2e-27	123	Triticum aestivum	Ta.5970.1.A1_at	BQ295334	-	-	3e-2	At3g54010	PAS1 (PASTICCINO 1)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1611681_at	CF513131	hypothetical protein LOC100241604	-	4e+0	At5g39360	EDL2 (EID1-like 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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